Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1236 ATGAGTATTTCTCAGTTTCGATCGAGAGTTTTGAGTTTTCTGATTTCAGTTTCCTGTTTTCTGACATGCTTGGGAAACAATGACGTGCCTGTCCAGTTGAATGATGATGTTCTTGGCTTGATTGTGTTCAAATCAGACCTTCAAGACCCTTCTTCTTATCTTGCTTCATGGAATGAAGACGATGCCAGTCCATGTTCATGGCAGTTCGTGCAGTGTAATCCTCAGAGCGGAAGAGTTTCTGAGGTCTCATTGGATGGCTTGGGATTATCTGGGAAGATTGGAAGAGGGCTTGAGAAATTGCAGCATCTTACTGTACTGTCCCTTTCTCATAACAACTTGAGTGGGAGTATTAGTCCATCTCTTACTCTTTCCACTACTCTTGAGAGACTCAACCTTAGTCACAATTCTCTTTCTGGTTCAATCCCTACTTCTTTTGTGAATATGAATTCAATAAAGTTTCTTGATCTTTCTGAGAATTCATTCTCGGGATCAATCCCTGAGAATTTTTTTGATACTTGTTCTTCCCTTCATCACATTTCTCTAGCTAGGAACATGTTTGATGGGCAGGTTCCTGGTTCACTGTCTAGGTGCTCCTCATTGAATAGCATTAATCTTTCCAATAATCGTTTCTCTGGTAATGTGGACTTTAACGGGATTTGGTCACTAACCAGGCTTAGAACTTTGGATCTATCCAAGAATGCCTTATCTGGGTCTTTACCTAATGGAATTTCATCCATACATAACTTCAAGGAGATCCTATTACAAGGTAACCAGTTTTCAGGTCCTTTATCCACTGATATTGGATTCTGCCTGCATCTGAGTAGGTTGGATTTTAGTGATAATCAGTTCAGTGGAGAACTACCTGATTCACTTGGGAGGCTTAGTTCTTTGAACTATTTCAAGGCATCAAATAATTTTTTCACCAGCGAATTCCCTCAATGGATTGGTAACCTTACCAGTCTGGAGTACCTAGAGCTTTCAAACAATGAGTTCACTGGAAGCATCCCACAGTCAATAGGGGGACTGGGATCACTGTCTCATCTGGGAGTTTCAAGTAACAAGCTTGTTGGAACTATTCCATCATCACTAAGTTCCTGCACGAAGTTATCTGTGATCCATCTCAGAGGCAATGGTTTCAATGGCACCATTCCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAATAGACTTGTCCCGCAATGAATTGAGTGGCTCAATTCCAGCAGGATCAAGCAGGCTCTTGGAAACTCTAACCAGCTTGGATCTTTCAGATAACCATCTCCAAGGGAATATCCCTGCAGAAACTGGTCTTCTTTCAAAACTACGTTATTTGAATCTGTCTTGGAATGATCTTCATTCACAGATGCCTCCAGAATTTGGCCTCCTTCAGAATCTAGAAGTTTTGGATATTCGAAACAGTGGCTTGCGTGGTTCAGTTCCAGCAGATATATGCGACTCAGGCAATTTAGCTGTCCTCCAACTAGATGGAAATTTATTGCAAGGGAATATTCCCGAAGAGATTGGGAATTGCAGCTCTCTTTACTTGCTGAGTTTGTCTCACAATAACTTGACTGGTTCAATCCCGAAGTCCATGTCAAAGCTAAACAAGCTAAAAATCCTCAAACTGGAATTCAATGAACTAAGTGGAGAGATACCAATGGAGCTTGGAATGCTTCAGAGTCTACTTGCTGTGAATATATCATACAACAGGCTCACAGGCAGGCTTCCTACAAGTAGCATATTTCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTGGGTCTATGCTCACCCTTGTTGCAGGGTCCGTGCAAGATGAATGTCCCCAAGCCACTGGTGCTTGACCCAAATGCCTATAACAGCCAAATAAGCCCTCAAAGGCAAAGAAACGAATCATCTGAGTCAGGATCGGTTCACCGCCACAGGTTTCTTAGCGTATCTGCCATTGTAGCGATATCTGCATCTTTTGTGATTGTATTAGGAGTGATTGCTATTAGCCTGCTTAATGTTTCTGTGAGGAGAAGGCTATCATTTGTGGATAATGCTTTGGAAAGCATGTGCTCAAGCTCTTCAAGATCAGGGAGTCCAGCCACAGGAAAGCTGATCCTGTTTGATTCCCAGTCCTCACCTGATTGGATCAGCAATCCCGAGTCCTTGCTCAACAAGGCATCAGAGATTGGAGAAGGAGTCTTTGGAACCCTCTACAAGGTTCCATTGGGATCACAAGGTAGAATGGTCGCAATCAAGAAGCTTATATCCACAAACATAATCCAATATCCAGAAGACTTTGACAGGGAGGTAAGAATCCTAGGGAAAGCAAGGCACCCAAATCTAATAGCATTGAAAGGATACTATTGGACTCCTCAATTACAGCTTTTAGTAACTGAGTTTGCACCAAATGGTAGTTTGCAAGCCAAGCTGCATGAAAGGCTTCCGTCTAGTCCTCCTCTTTCTTGGCCTATAAGGTTCAAAATTTTGCTTGGAACAGCAAAAGGGATTGCTCATTTGCACCATTCTTTCCGTCCACCAATCATCCACTACAACATAAAGCCAAGTAACATTCTGCTAGATGAAAACTGCAACCCCAAGATCTCAGATTTCGGGTTAGCTCGGCTTCTGACAAAGCTAGACAGGCATGTGATGAGCAATAGGTTTCAGAGTGCATTAGGATATGTGGCACCGGAATTGGCGTGCCAGAGCCTAAGGGTGAATGAGAAATGTGATGTGTATGGTTTTGGGGTGATGATCCTTGAGCTGGTGACAGGTAGGAGGCCAGTGGAGTATGGTGAAGACAATGTGCTTATACTGAATGACCATGTGAGGGTGCTGCTTGAGCAAGGTAATGTGTTGGAATGTGTGGATCAAAGTATGAATGAGTACCCAGAAGATGAGGTATTGCCTGTTCTAAAGCTGGCGATGGTATGCACTTCTCAAATTCCTTCTAGCAGGCCAACTATGGCTGAAGTGGTGCAAATACTGCAGGTCATTAAAACACCAGTTCCTCAAAGGATGGAAGTGTTTTGA 3024 0.4296 MSISQFRSRVLSFLISVSCFLTCLGNNDVPVQLNDDVLGLIVFKSDLQDPSSYLASWNEDDASPCSWQFVQCNPQSGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLSGSISPSLTLSTTLERLNLSHNSLSGSIPTSFVNMNSIKFLDLSENSFSGSIPENFFDTCSSLHHISLARNMFDGQVPGSLSRCSSLNSINLSNNRFSGNVDFNGIWSLTRLRTLDLSKNALSGSLPNGISSIHNFKEILLQGNQFSGPLSTDIGFCLHLSRLDFSDNQFSGELPDSLGRLSSLNYFKASNNFFTSEFPQWIGNLTSLEYLELSNNEFTGSIPQSIGGLGSLSHLGVSSNKLVGTIPSSLSSCTKLSVIHLRGNGFNGTIPEGLFGLGLEEIDLSRNELSGSIPAGSSRLLETLTSLDLSDNHLQGNIPAETGLLSKLRYLNLSWNDLHSQMPPEFGLLQNLEVLDIRNSGLRGSVPADICDSGNLAVLQLDGNLLQGNIPEEIGNCSSLYLLSLSHNNLTGSIPKSMSKLNKLKILKLEFNELSGEIPMELGMLQSLLAVNISYNRLTGRLPTSSIFQNLDKSSLEGNLGLCSPLLQGPCKMNVPKPLVLDPNAYNSQISPQRQRNESSESGSVHRHRFLSVSAIVAISASFVIVLGVIAISLLNVSVRRRLSFVDNALESMCSSSSRSGSPATGKLILFDSQSSPDWISNPESLLNKASEIGEGVFGTLYKVPLGSQGRMVAIKKLISTNIIQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVTEFAPNGSLQAKLHERLPSSPPLSWPIRFKILLGTAKGIAHLHHSFRPPIIHYNIKPSNILLDENCNPKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEQGNVLECVDQSMNEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1236 1007 Gene3D Phosphorylase Kinase; domain 1 720 801 - -
Vra4g1236 1007 SUPERFAMILY L domain-like 317 589 - -
Vra4g1236 1007 ProSitePatterns Protein kinases ATP-binding region signature. 726 750 IPR017441 GO:0005524
Vra4g1236 1007 PRINTS Leucine-rich repeat signature 127 140 - -
Vra4g1236 1007 PRINTS Leucine-rich repeat signature 222 235 - -
Vra4g1236 1007 SUPERFAMILY L domain-like 49 387 - -
Vra4g1236 1007 Gene3D Transferase(Phosphotransferase) domain 1 802 1004 - -
Vra4g1236 1007 CDD STKc_IRAK 726 994 - -
Vra4g1236 1007 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 1005 - -
Vra4g1236 1007 SMART LRR_typ_2 100 124 IPR003591 -
Vra4g1236 1007 SMART LRR_typ_2 318 341 IPR003591 -
Vra4g1236 1007 SMART LRR_typ_2 462 486 IPR003591 -
Vra4g1236 1007 SMART LRR_typ_2 148 172 IPR003591 -
Vra4g1236 1007 SMART LRR_typ_2 222 246 IPR003591 -
Vra4g1236 1007 SMART LRR_typ_2 414 437 IPR003591 -
Vra4g1236 1007 SMART LRR_typ_2 558 583 IPR003591 -
Vra4g1236 1007 SMART LRR_typ_2 438 461 IPR003591 -
Vra4g1236 1007 SMART LRR_typ_2 342 366 IPR003591 -
Vra4g1236 1007 Gene3D Ribonuclease Inhibitor 36 190 IPR032675 -
Vra4g1236 1007 Gene3D Ribonuclease Inhibitor 320 607 IPR032675 -
Vra4g1236 1007 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Vra4g1236 1007 ProSiteProfiles Leucine-rich repeat profile. 416 438 IPR001611 GO:0005515
Vra4g1236 1007 ProSiteProfiles Protein kinase domain profile. 720 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1236 1007 PANTHER BNAA09G02190D PROTEIN 10 1005 - -
Vra4g1236 1007 Gene3D Ribonuclease Inhibitor 191 315 IPR032675 -
Vra4g1236 1007 ProSiteProfiles Leucine-rich repeat profile. 102 124 IPR001611 GO:0005515
Vra4g1236 1007 Pfam Leucine rich repeat 488 547 IPR001611 GO:0005515
Vra4g1236 1007 Pfam Leucine rich repeat 392 451 IPR001611 GO:0005515
Vra4g1236 1007 Pfam Leucine rich repeat 303 355 IPR001611 GO:0005515
Vra4g1236 1007 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Vra4g1236 1007 SUPERFAMILY Protein kinase-like (PK-like) 723 1001 IPR011009 -
Vra4g1236 1007 Pfam Protein kinase domain 722 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1236 Vra-Chr4 19336480 19340200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1236 14 1004 Receptor kinase-like Gene Family AT3G28040 63.754 0.0 1248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vra4g1236 Pkinase 4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1236 - - pvu:PHAVU_008G017400g 1805.8