Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1228 ATGACTCAGGCAGTGGAGGTTCTGAATAGGTATGGGACGGATATGGTGGGGGAGCCCAGAGGTTCTGATTCGGAGTGTTTGGCGGGCTTCGAGTGTTTTCTGAACATTGTGAGGGCACTGGGAATGGGATCGTGCATCTCGGAGGTTGGGGCTGGTGGTAGCTCCCCTCCTCTTCTTTCTGATTCCAATACGGATGGGAAGAGGAGGAGGTTGAGGGGTTCCTCGTCCTTTGATTTCAGAGTGCCTGGGAGGATGTTCTCGAATGGGTCAAGCGAGGTTGCATCCATGTTTTGTAAGCAAGGAAGAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTTGCTCCAAGGAAGACACCATTTTTTGTGGTGTTTTTGATGGTCACGGACCTTATGGCCACAAAGTTGCGAAGAAAGTTAGGGATTCTTTTCCTCTAAAGCTTAATGCCCAATGGGATTTGCATCATAAGAATAAAGATGGAGTCAGTGATCATAGCAGTGCCAACGGAAGTTATAAATCTGAAGGAAATGGATTTAGACTGGTGGATGAGAAAACTTACCCCACTTATCATGAACTTGATGAAACAGATATTACTTTGACATTGAAAGAGTCTTATCTGAAAGCTTGTAAGCTCATGGACAAAGAACTGAAAATGCATGCTGATATTGACTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAACAAGGGCTGGACCTTGTTATTGGAAATATTGGGGACTCGAGAGCTATACTGGGTACCAGAGATCACGATGATTCTCTTATTGCTGTTCAGTTGACTGTTGACCTTAAGCCAAACCTTCCAAGGGAAGAAGAGAGAATTAGGCTTCGTAGAGGAAGGGTTTTTTCCCTTCACAATGAACCTGAGGTGGCTCGAGTTTGGCTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCTCGTGCATTTGGAGACTTTTGCCTGAAAGACTTTGGATTGATTTCTGTTCCAGATATCTCATATCACCACCTTACCGAGAAGGATGAGTTTGTTGTGCTAGCGACAGATGGGATTTGGGATGTTTTATCAAACGAAGAAGTCGTGGACATTGTAGCATCTGCTCCACGGTCTACTGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCAGGCATGGAGGACAAAATATCCTTTTTGCAAGGTTGATGATTGTGCCGCGGTTTGCCTCTTCTTTGATCCAGATACAGATTTCAAGTCAAATGATACCAAAGGCAAGTTGGTATCGGAGGCATCTGTTGACCAATCCGAGGATTTATCTTGA 1308 0.4511 MTQAVEVLNRYGTDMVGEPRGSDSECLAGFECFLNIVRALGMGSCISEVGAGGSSPPLLSDSNTDGKRRRLRGSSSFDFRVPGRMFSNGSSEVASMFCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHKVAKKVRDSFPLKLNAQWDLHHKNKDGVSDHSSANGSYKSEGNGFRLVDEKTYPTYHELDETDITLTLKESYLKACKLMDKELKMHADIDCFCSGTTAVTLVKQGLDLVIGNIGDSRAILGTRDHDDSLIAVQLTVDLKPNLPREEERIRLRRGRVFSLHNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLISVPDISYHHLTEKDEFVVLATDGIWDVLSNEEVVDIVASAPRSTAARALVESAVQAWRTKYPFCKVDDCAAVCLFFDPDTDFKSNDTKGKLVSEASVDQSEDLS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1228 435 MobiDBLite consensus disorder prediction 414 435 - -
Vra4g1228 435 CDD PP2Cc 93 407 IPR001932 -
Vra4g1228 435 Pfam Protein phosphatase 2C 165 385 IPR001932 -
Vra4g1228 435 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 42 415 - -
Vra4g1228 435 PANTHER ALPHABET, ISOFORM E-RELATED 42 415 - -
Vra4g1228 435 SUPERFAMILY PP2C-like 85 408 IPR036457 -
Vra4g1228 435 Gene3D - 87 408 IPR036457 -
Vra4g1228 435 ProSiteProfiles PPM-type phosphatase domain profile. 93 407 IPR001932 -
Vra4g1228 435 SMART PP2C_4 83 405 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1228 Vra-Chr4 19275148 19280275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1228 61 408 PP2C-type Phosphatase Gene Family AT1G16220 59.889 2.45e-151 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1228 - - gmx:100810538 797.349