Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1224 ATGGCAGCGGCGTTCCAGGAAGGAGGAGGTGCCGACGACGACGCCACCATCGACGTCCACACAACGCGTGGCACGCCCATCCGCTACCTTCCCCTCGACCACCTCTACTCTGCCACGTCGCCCTGCCGCGTCACGGCCAGCGGCTCTTCCAACGTCATGTCCAAGAAGGTCAAGGCTCGAAAACTCACCACTCTCGCCGCGCATCATCATTTCACCAACCACGACCACAAGAAAACCATGTCGTCCTCATCGTCCTCCTCCCACCCTCCTTCTTCCAAGCCTCCCTTGCTCTTCGTCTACTCGCGCCGCCGCAAGAGGCATTCCCCTTCCACGGCGCTGTGCAAAACCGAGGGCAAGGTGAATGCGGACGAGAATGAGGATGAGACAAGGTTGCTGAAGAAGAGGAAAATTGGGAGCACTGAGTTGGAGAGGCTGGGTGTGGATTTGAACACTGCGATTGGGGATGCTGACGGACCTCGATTGAGGGAATGTCGAAACCAATTTGGGAATTCTGGTGCTGCTGGGAATGTTAAGTGTGGTTCCTTGGAGAATTTGCCCAAAATGTCGCCTGATTCTCGCCCTGTGAAAAAATGGGTCGGGTTGAGTTTTGATAATGCTGATCCTGAGGTGTTTGTTGGATTAAGATGCAAGGTTTTTTGGCCCATGGATTTGAAAGCGTACACTGGCTATGTCAGAGGTTATGACAAGGAAACTAAGATACATCATGTCAAGTATGATGATGGAGATGAGGAAAATTTAATTCTTTCAAATGAGAATATTAGATTCCATGTTTCCCGTGATGAGGTGAAACATTTAAAATTGAATCTTGCCAAAGTTCGTGAGAACAATGTCTCCGATTATGATGTTGAAGAGATGCTTGCAATGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATAATATGGGCTAAGCTAACAGGTCATGCAATGTGGCCGGCTGTTGTTTTGGAGGAATCACTTGCTAGCAACTGTAAAGGTTTAAAGATGAGTTTGGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACCGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTGAGTGAACAGAAGCTTCCTTTGGAAATGCTAGAGTTACAGAAAAGATGTGCAGCTGATAATTGTAACAATGCAAGTAGAGAGGAAGGAGGATGTACAGATTCAGGCGATGATTGTTTACAAGGCGAGAGGACTTTATTGGCTAAGGAAACTGTTGAAACTTTTCCTTACGAATTAGAAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTGCATTCAGAGACGGAAGGTTTATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCAGTTACTGACCCAGAAGTTTTTGCTTCTTATAAGATGGAGGTTTTGAGAGATCCAGAGTCCAAATTTCGTCCTCTATTTAGAGTGACAGTTGATGGTGGCGAGCAGTTCAACGGTAATACTCCATCTGTTTGTTGGAACGAGATATTCAAAAAGATAAAAGAAATGGAAAAGAATGCTTCTGATAGCAGTCTTGCTGAAGGTGGGGTCGAAAAGGGCTACGCATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAGGTGCTTAAACTTATACAGGGATTGTCTAAATCCAAAATCTCTTCAAGGAATTCATCTTGCAAGTTAGGTTCCCAAAGACATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGACCTCGATAAGTGCAACGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGTTATGGAGAACTAGAACCTGTTAATGGGGTGCTATGGTTATGCAATTTATGTCGTTCAGGAGCTCCGCCTCCACCTTGCTGCTTATGTCCACTCATAGGTGGAGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGTTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGCTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAATAGTTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTCGAGCTTGAAAATGAGGATAGGCTCTATCTGCTTTCTGTTGATGACGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAACCGTCCAATGAACATTCTGTTGCTGATGATCGTATAGTTCGAGTAGCTGGTCTATGTTCAGACTATGAACCACCGCCCAATCCATCTGGTTGTGCTCGAAGTGAACCATATGATTACTTTGGCAGGAGAGGTCGAAAGGAACCTGAAGCACTTGCAGCTGCATCATTGAAACGGTTGTTCGTGGAGAATCAGCCTTACTTAGTAGGTGGATACTGCCAGCATGGATCATCAAATGACCCAGAGCCTTCTGGCAGAGGAGTCTGCTCCAAATTTTTTTGTAGCCAACAAAGGCTAAGAACATCTCTGATTGACACATCTAACAACATACTTTCTATCTCTGAAAAATATGAGTACATGAGGGAAACCTTTCGGAAGCGGCTTGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCACATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCACCAATAGCTGACCGGAGAGAACACTTTATATACAATTCATTGGTGGGTGCTGGAACATATATGTTTCGGATTGACGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATAAACCATTCTTGTGCGCCAAATTGCTATTCAAGAGTAATAAGTGTTAATGGCGACGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATTGATGAACGGCTTGCTTGTTACTGTGGCTTCCCAAAGTGCCGAGGTATAGTAAACGATACGGAAGCAGAAGAGCGGGCTGCTACCCTTTATGCACCAAGAAGGGAATTGATAGATTGGAGAGGAGAATGA 3264 0.4433 MAAAFQEGGGADDDATIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKVKARKLTTLAAHHHFTNHDHKKTMSSSSSSSHPPSSKPPLLFVYSRRRKRHSPSTALCKTEGKVNADENEDETRLLKKRKIGSTELERLGVDLNTAIGDADGPRLRECRNQFGNSGAAGNVKCGSLENLPKMSPDSRPVKKWVGLSFDNADPEVFVGLRCKVFWPMDLKAYTGYVRGYDKETKIHHVKYDDGDEENLILSNENIRFHVSRDEVKHLKLNLAKVRENNVSDYDVEEMLAMAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLEESLASNCKGLKMSLGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCAADNCNNASREEGGCTDSGDDCLQGERTLLAKETVETFPYELEDLQILSLGKIVEDSAFRDGRFIWPEGYTAVRKFTSVTDPEVFASYKMEVLRDPESKFRPLFRVTVDGGEQFNGNTPSVCWNEIFKKIKEMEKNASDSSLAEGGVEKGYASGSDMFGFSNPKVLKLIQGLSKSKISSRNSSCKLGSQRHNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADDRIVRVAGLCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSSNDPEPSGRGVCSKFFCSQQRLRTSLIDTSNNILSISEKYEYMRETFRKRLAFGKSRIHGFGIFAKHPHKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRRELIDWRGE* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1224 1087 ProSiteProfiles FYR domain FYRC motif profile. 510 596 IPR003889 GO:0005634
Vra4g1224 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 799 IPR013083 -
Vra4g1224 1087 SMART PHD_3 621 668 IPR001965 -
Vra4g1224 1087 SMART PHD_3 731 797 IPR001965 -
Vra4g1224 1087 ProSiteProfiles FYR domain FYRN motif profile. 448 506 IPR003888 GO:0005634
Vra4g1224 1087 Pfam PWWP domain 308 395 IPR000313 -
Vra4g1224 1087 SUPERFAMILY FYVE/PHD zinc finger 613 683 IPR011011 -
Vra4g1224 1087 Coils Coil 402 422 - -
Vra4g1224 1087 ProSitePatterns Zinc finger PHD-type signature. 622 667 IPR019786 -
Vra4g1224 1087 SMART fyrn_3 462 506 IPR003888 GO:0005634
Vra4g1224 1087 Pfam PHD-finger 634 668 - -
Vra4g1224 1087 SMART set_7 923 1047 IPR001214 GO:0005515
Vra4g1224 1087 SMART PWWP_4 305 368 IPR000313 -
Vra4g1224 1087 Pfam F/Y rich C-terminus 512 585 IPR003889 GO:0005634
Vra4g1224 1087 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 17 1084 - -
Vra4g1224 1087 ProSiteProfiles Extended PHD (ePHD) domain profile. 673 797 IPR034732 -
Vra4g1224 1087 Gene3D - 208 263 - -
Vra4g1224 1087 CDD SET_SETD1-like 911 1059 - -
Vra4g1224 1087 Gene3D SET domain 869 1077 IPR046341 -
Vra4g1224 1087 ProSiteProfiles Post-SET domain profile. 1047 1063 IPR003616 -
Vra4g1224 1087 SMART fyrc_3 514 608 IPR003889 GO:0005634
Vra4g1224 1087 MobiDBLite consensus disorder prediction 68 96 - -
Vra4g1224 1087 Pfam F/Y-rich N-terminus 455 503 IPR003888 GO:0005634
Vra4g1224 1087 Gene3D - 294 406 - -
Vra4g1224 1087 Pfam SET domain 934 1040 IPR001214 GO:0005515
Vra4g1224 1087 MobiDBLite consensus disorder prediction 108 127 - -
Vra4g1224 1087 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 601 664 IPR002219 -
Vra4g1224 1087 ProSiteProfiles PWWP domain profile. 307 370 IPR000313 -
Vra4g1224 1087 Pfam PHD-zinc-finger like domain 675 796 - -
Vra4g1224 1087 SUPERFAMILY SET domain 913 1060 IPR046341 -
Vra4g1224 1087 ProSiteProfiles SET domain profile. 923 1041 IPR001214 GO:0005515
Vra4g1224 1087 ProSiteProfiles Zinc finger PHD-type profile. 619 670 IPR019787 -
Vra4g1224 1087 PANTHER PHD FINGER PROTEINS 17 1084 - -
Vra4g1224 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 667 IPR013083 -
Vra4g1224 1087 SUPERFAMILY Tudor/PWWP/MBT 301 401 - -
Vra4g1224 1087 Gene3D - 449 588 - -
Vra4g1224 1087 CDD ePHD_ATX1_2_like 682 796 IPR041956 -
Vra4g1224 1087 MobiDBLite consensus disorder prediction 78 92 - -
Vra4g1224 1087 CDD PHD_ATX1_2_like 621 667 IPR042010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1224 Vra-Chr4 19196879 19210276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1224 622 767 C2H2 Transcription Factor Family AT3G14740 39.735 5.41e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra4g1224 zf-HC5HC2H_2 3.9e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1224 - - gmx:100806736 1991.85