Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1219 ATGTGTTCTCTTCTTTGGAGTTCCATTGTTATGTGTGTAGCACTTCAACTTCTTCAGCTTGGCATTGTGCACCCTTCACCCTCTCATATCAGGATCACTCACTTACCGGGCCAACCCCAAGTTCAGTTTCAGCAGTTTTCAGGTTATGTAAATGTTGATCACAGAAACCAGCAAGCACTCTTTTTCTACTTTGCTGAAGCTGAAAAGGATGCAGCTTCCAAGCCCCTTGTTCTGTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTTGGGGTTGGTGCGTTTTCAGAGAATGGACCATTTAGGCCCAAAGGAGAAGGCTTGGTTAGGAATCAATTCAGCTGGAACAGAGAAGCTAATATGCTGTATTTGGAAACTCCAATTGGAGTTGGATTCTCTTACTCAAGTGATACTTCTGCTTATGAGGGTGTGAATGACAAAATTACAGCCAGGGATAACTTGGTGTTCTTGAAAAACTGGTTTATAAAGTTCCCAGAATACAGAAACAGAAGTTTATTCATTGTAGGAGAAAGCTATGCTGGCCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTCAATCTGAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTTGCAACGGATTTCAATTCGAGAGCAGAGTTCTTCTGGTCGCATGGGTTAATTTCAGATACAACGTACAAAGTGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATATTACAATGGTGCTGTTTCTCCTGTCTGTTCAAGTGTTATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTGGACAAGTATGATGTGACCCTTGATGTTTGTTTATCTTCAGTGTTTTCACAAACCAAAGTCCTCAATCCCCAGCAAGTCACTGAGACGATAGATGTATGTGTGGAAGATGAAACAGTCAATTATCTGAACAGAAAAGATGTGCAATCAGCTTTGCATGCACGTCTTGTTGGAGTTCAAAGATGGTCTGCATGCAGCAATGTCCTGGATTATGAGCTGCGTGACTTGGAAATACCAACAATCACTGTTGTGGGGAAGCTAGTACAGGAGGGAATACCAGTACTGGTTTACAGTGGTGATCAGGATTCGGTAATCCCTCTGACTGGAAGTAGAACATTAGTACATAAATTGGCAAAAAAGCTAGGATTGAAAACCACTGTGCCATACAGGGTGTGGTTTGAGAAGCAGCAGGTGGGTGGGTGGACTCAAGTTTATGGTGACATCCTTTCATTTGCCACTATCAGGGGAGCATCACATGAGGCTCCATTTTCACAGCCTGAGAGGTCACTTGTGCTGTTCAAGTCCTTCTTAGAAGGACGACCAATGCCAGAAGAGTTTTGA 1386 0.4257 MCSLLWSSIVMCVALQLLQLGIVHPSPSHIRITHLPGQPQVQFQQFSGYVNVDHRNQQALFFYFAEAEKDAASKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEGLVRNQFSWNREANMLYLETPIGVGFSYSSDTSAYEGVNDKITARDNLVFLKNWFIKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDTTYKVFTSVCNYSRYVREYYNGAVSPVCSSVMSQVSTETSRFVDKYDVTLDVCLSSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHARLVGVQRWSACSNVLDYELRDLEIPTITVVGKLVQEGIPVLVYSGDQDSVIPLTGSRTLVHKLAKKLGLKTTVPYRVWFEKQQVGGWTQVYGDILSFATIRGASHEAPFSQPERSLVLFKSFLEGRPMPEEF* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1219 461 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Vra4g1219 461 Gene3D - 356 454 - -
Vra4g1219 461 PANTHER CARBOXYPEPTIDASE 7 459 - -
Vra4g1219 461 Gene3D - 309 345 - -
Vra4g1219 461 Pfam Serine carboxypeptidase 36 454 IPR001563 GO:0004185|GO:0006508
Vra4g1219 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Vra4g1219 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 7 459 IPR001563 GO:0004185|GO:0006508
Vra4g1219 461 Gene3D alpha/beta hydrolase 28 288 IPR029058 -
Vra4g1219 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Vra4g1219 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Vra4g1219 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Vra4g1219 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Vra4g1219 461 SUPERFAMILY alpha/beta-Hydrolases 32 458 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1219 Vra-Chr4 19144977 19148623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1219 317 457 Calmodulin-binding Proteins AT2G22960 26.241 2.87e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1219 K16297 - gmx:100805130 880.167