Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1218 ATGATTCATGCCTCATTTTGGAGCTTCCGGGATTGGTTTCTGGCTTTGTTTGTTTGTTGTTCTTTGATGTTTAGGAAAAGGAACATCGCTTCTTCTCTTGCCAGGGAATTGTTGGCACTTCAGCCACTTTTTATTATTTTCTTGTTCAGCTTGCACCACAACACTGTGCAATGTCAAGGAAGGTTGAGTAAACATGTTTCTTCAGAGCCTCCATCGCCTTCTAGGCCATCACCACCTTCATCATCAGGATACAGGGATGACCCCAAGAAGATAATTTTGAGCTTGGTTTTAGGAGCAGTAACTGGACTAGTTTGTTCTGTTTTCTTTGCACTTGTGGTACGTTGTGTGGTGCAGTACCTAAACCGCACACCAATCCTCAAGGGGCCTGTTATTTTCTCCCCCAAAATTGCCCCCAAGACACTCCAATTAGCTTTGGCGAAGGAAAACCACTTGCTTGGTTCGAGTCCTAACGGGAAATACTACAAAACTGTGCTTGACAATGGACTCACTATTGCAGTGAAAAGGCTAACACCCTTTGGAAGCAGCTCCCCAGAGGCTAAGAAAAAATCAGTGAAGAGGCAGATACAAACTGAGCTAGAGCTTCTTGCAAGCTTAAGACACAGGAACTTGATGAGTTTGAGAGCCTATGTACGTGAGCCTGATGGTTTCTCATTGGTTTATGATTATGTGTCCACTGGGAGTCTTGCTGATGTGATGAATAGAGTTTGGGAGAATGAATTGGCCTTTGGTTGGGAAGTTAGGCTGAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACCTGTGCGCCTCAGATACTGTTGCACTACAACTTGAAGCCAACAAATGTGATGCTGGATGGTGATTTTGAACCCAGATTAGCGGACTATGGTTTGGCCAAACTTCTACCCAACTTGGATAGAGGAACTTCTCTCTACACTCCTCCTGAATGTTTCCACAACTGCAGCAGGTACACTGACAAAAGTGACATCTTCAGTTTTGGCATGATACTAGGTGTTTTGTTAACTGGTAAGGACCCTACAGATCCATTCTTTGGAGAAGCAGCGAGTGGTGGAAGTTTGGGAGGTTGGTTGAGGCACTTGCAGCAAGCTGGTGATGCGAGGGATGCCCTTGATAAGAGCATGTTAGGGGAAGAAGGAGAGGAAGATGAGATGCTAATGGCTGTTAGGATTGCTGCTGCATGCCTCTCTGATATGCCTGCAGACAGGCCTTCTAGTGACGAGCTTGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1290 0.4543 MIHASFWSFRDWFLALFVCCSLMFRKRNIASSLARELLALQPLFIIFLFSLHHNTVQCQGRLSKHVSSEPPSPSRPSPPSSSGYRDDPKKIILSLVLGAVTGLVCSVFFALVVRCVVQYLNRTPILKGPVIFSPKIAPKTLQLALAKENHLLGSSPNGKYYKTVLDNGLTIAVKRLTPFGSSSPEAKKKSVKRQIQTELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLADVMNRVWENELAFGWEVRLRIAVGVVKGLQYLHFTCAPQILLHYNLKPTNVMLDGDFEPRLADYGLAKLLPNLDRGTSLYTPPECFHNCSRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGGWLRHLQQAGDARDALDKSMLGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1218 429 Pfam Protein kinase domain 148 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1218 429 ProSiteProfiles Protein kinase domain profile. 146 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1218 429 SUPERFAMILY Protein kinase-like (PK-like) 149 423 IPR011009 -
Vra4g1218 429 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE CORYNE 32 429 - -
Vra4g1218 429 CDD STKc_IRAK 152 426 - -
Vra4g1218 429 PANTHER - 32 429 - -
Vra4g1218 429 Gene3D Phosphorylase Kinase; domain 1 139 229 - -
Vra4g1218 429 MobiDBLite consensus disorder prediction 63 85 - -
Vra4g1218 429 Gene3D Transferase(Phosphotransferase) domain 1 230 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1218 Vra-Chr4 19140999 19143976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1218 56 426 Receptor kinase-like Gene Family AT2G31880 32.367 6.14e-63 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vra4g1218 Pkinase 3.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1218 - - vra:106759565 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1218 4 19140999 19143976 Vra4g1218 4 19140999 19143976 ECH