Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1216 ATGGCTCTGGACCAGCCTTCCAACCCCAACGCCGTTGACGGGGCGGGTAACGGCGCCGCGCCGTGCTCCGCCGCGGACGGAGGCGACGACGGAAGGCCGCCGGCGAGGCTGCCGCGGTGGACGCGGCAGGAGATTCTGGTGCTGATTCAGGGGAAGAGTGACGCGGAGAACCGGTTCAGACCGGGTCGGGGGAGCGGTTCGGCGTTCGGTTTGAGCGAACCGAAATGGGCGCTGGTCTCGGCGTACTGCAAAAAGCACGGCGTGAACCGGGAGCCGGTGCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTACAAGAAGATCAAGGAGTGGGAGTCGCAGGTCAGGGACGAAACGGAGTCGTTTTGGCTCATGAGGAATGATTTGAGGAGGGAGAGGAAATTGCCCGGTTATTTTGACAGGGAAGTGTATAATATTCTCGATTCTCCGTCCACGGCGGCTGCTGCGACTGTGGAGACTCCTACGGCCGCGGTGGAGGCGGCGGTGGATGAGGAAGTGCACCTGTATGATAGTAATCGGAGAGTTGGGAGTGATGATGGGTTGTTCTCTGATTGTGAGAAGGAGGAGGTTTTGCTTTCGGCCCCTTCCAAGGATGTTCCTGCACCCGTTCCAATCTCAGAGAAGCAGTTTCAACCACTCCTTCAACTCTGTGAAGGGGAAGGCAATGCTGAAGGTACTACCAATGAGAAACGGGCAACCCCAAATCCGGAAATGGGTTCTACATCTCAAGGGGGACGGAAGAGGAAACGATTTTCAACCGATGCAGAGGAGGAAAGTTTGCAAAGTCAATTAATTGATGTCTTAGAAAAGAATGGCAAAATGCTTCGTGATCATCTTGAAGCTCAGAACACCAATTTCCAATTGGACCGTCAGCAACAGAAAGACACTGCAACTAACATTGTTGCTGTACTTGATAAGCTGGCGGATGCTCTAGGGAGAATTGCTGATAAATTGTAG 981 0.5484 MALDQPSNPNAVDGAGNGAAPCSAADGGDDGRPPARLPRWTRQEILVLIQGKSDAENRFRPGRGSGSAFGLSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLRRERKLPGYFDREVYNILDSPSTAAAATVETPTAAVEAAVDEEVHLYDSNRRVGSDDGLFSDCEKEEVLLSAPSKDVPAPVPISEKQFQPLLQLCEGEGNAEGTTNEKRATPNPEMGSTSQGGRKRKRFSTDAEEESLQSQLIDVLEKNGKMLRDHLEAQNTNFQLDRQQQKDTATNIVAVLDKLADALGRIADKL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1216 326 Gene3D - 40 108 - -
Vra4g1216 326 CDD GT1 38 110 - -
Vra4g1216 326 MobiDBLite consensus disorder prediction 234 250 - -
Vra4g1216 326 ProSiteProfiles Myb-like domain profile. 32 103 IPR001005 -
Vra4g1216 326 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 1 326 - -
Vra4g1216 326 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 326 - -
Vra4g1216 326 MobiDBLite consensus disorder prediction 1 39 - -
Vra4g1216 326 Pfam Myb/SANT-like DNA-binding domain 39 126 IPR044822 -
Vra4g1216 326 MobiDBLite consensus disorder prediction 228 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1216 Vra-Chr4 19121207 19125410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1216 39 111 Trihelix Transcription Factor Family AT1G33240 34.247 9.25e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra4g1216 Myb_DNA-bind_4 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1216 - - gmx:100788594 554.673