Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1214 ATGTCTGCAATGGTTTCAGCTCTTGCTCAAGTTATGACAACTGCAAATCAAAACCCTCCCATCTCACAATCATCATCTTTTCCTCTCTCAGATCAACCTCAGCCTTCTTCAGATCAAGGAGTGAGAAAGAAGGCACACTACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATCCGTGACCCTAAAAAAGCAGCAAGAGTGTGGTTAGGAACCTTTGAAACAGCAGAAGATGCAGCCCTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCAAAGCTTAATTTCCCAGAAAGAGTTCATCACAATCTTTCTTTTATGCACCAACACCAACCTTCATCACAATCTCTTTCTTCTTCTGTTCATGTTTCTGCTCCACCCTCACATCATCAACCTGGCCACCAACTTTTTCCAAACCTCCTTCAATATGCTCAGATTCTTTCAAGTGATGATGCACAGTTTCCTTACTACACATCCCATCTTTTCAATCAACAACAACAACATCATCAGCAACAACAACACCAACAACAACAACAAGATCCTTTCAGCTCTCAGTTTTCTACCACCTTTTCTTCAACCTCTTCTCAACCATCCTACTTCTACAACCACCAACAACAATTTGATGAACAGGGACCTGATCACTCACCCCAGTAG 672 0.4271 MSAMVSALAQVMTTANQNPPISQSSSFPLSDQPQPSSDQGVRKKAHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVHHNLSFMHQHQPSSQSLSSSVHVSAPPSHHQPGHQLFPNLLQYAQILSSDDAQFPYYTSHLFNQQQQHHQQQQHQQQQQDPFSSQFSTTFSSTSSQPSYFYNHQQQFDEQGPDHSPQ* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1214 223 MobiDBLite consensus disorder prediction 114 141 - -
Vra4g1214 223 Gene3D AP2/ERF domain 45 105 IPR036955 GO:0003700|GO:0006355
Vra4g1214 223 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Vra4g1214 223 MobiDBLite consensus disorder prediction 16 49 - -
Vra4g1214 223 MobiDBLite consensus disorder prediction 169 223 - -
Vra4g1214 223 MobiDBLite consensus disorder prediction 114 132 - -
Vra4g1214 223 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Vra4g1214 223 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Vra4g1214 223 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Vra4g1214 223 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Vra4g1214 223 MobiDBLite consensus disorder prediction 16 39 - -
Vra4g1214 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 16 214 - -
Vra4g1214 223 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Vra4g1214 223 PANTHER DNA-BINDING DOMAIN 16 214 IPR044808 GO:0003700|GO:0009873
Vra4g1214 223 CDD AP2 45 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1214 Vra-Chr4 19096208 19099616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1214 4 180 AP2-EREBP Transcription Factor Family AT5G13330 53.552 7.29e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra4g1214 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1214 - - vun:114185501 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1214 4 19096208 19099616 Vra1g0609 1 7069013 7071114 ECH
Vra4g1214 4 19096208 19099616 Vra7g3147 7 51244645 51246332 ECH
Vra4g1214 4 19096208 19099616 Vra4g1214 4 19096208 19099616 ECH
Vra4g1214 4 19096208 19099616 Vra7g3556 7 54907064 54912975 ECH