Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1212 ATGGTTGCCGCCAAGAAGACCAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAGTACACCCTTGGTTACAAGACCGTTCTTAAATCGCTCAGGAGCTCCAAAGGAAAACTGATTATCATTGCCAACAACTGCCCTCCTTTGAGGAAGTCCGAGATAGAATACTATGCTATGTTAGCAAAGGTCGGAGTTCATCACTACAATGGGAACAATGTTGATTTGGGAACTGCATGCGGCAAATATTACAGAGTGTGCTGTCTCAGCATTATTGATCCTGGTGATTCTGATATCATCAAGACACTGCCTGGTGAACTATAA 339 0.4454 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPGEL* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1212 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Vra4g1212 112 Gene3D - 2 108 IPR029064 -
Vra4g1212 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Vra4g1212 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Vra4g1212 112 PANTHER RIBOSOMAL PROTEIN L30 1 111 IPR039109 GO:0003723
Vra4g1212 112 PANTHER 60S RIBOSOMAL PROTEIN L30 1 111 - -
Vra4g1212 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Vra4g1212 112 SUPERFAMILY L30e-like 13 106 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1212 Vra-Chr4 19086565 19088336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1212 1 111 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 87.387 6.29e-71 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1212 K02908 - gmx:100806260 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1212 4 19086565 19088336 Vra1g1189 1 15646027 15647840 PCT