Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1205 ATGTTCCCTTCTTCTAATTACACCTCCTCGGGCTCTTACCCTCGTTTCCCTTCTTCATCTTCTTCTGCTTCGCCCTACCCTTCTTTCACTTTCCTTCACCCTGAAAATTCTTCTGCCAGCACCACCTTTCTCCATGATCCACTTTCTGTTACCTTCATACCGACTAATTATCATGCTCCGATTCCTGAAACACTGGCCAATTGGGCAGTTGCAGATTGTGCCACTGCAGCAATGCTCAATCAGGATCTCGGTGGTGCCCTTTATGGCATCACCAAGAAACCTGCGAAGAAAACGGCCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGCTTGAGGGACCGGAGGGTGAGGCTGTCCATTGAGATTGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCGATTAAGGAGCTAACTCGAAGCAAGCACAGTGCTGATAGCTTCGAATTCTCCTCATCTTCGGATGGTGAAGTGGTTTCTGTGATCCACCAAGACCAACAACAGCAACAAGGGATGGACTTTGAAGAGGGGAAGTTGAAAGAACCTGCCTATTGTGTTAAAGCAAAAATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGAGAAAGGACTAGTTGCAAGATACTGTGCAGTGGTGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCATCAAATCCTGAACCAATTAAAGTCACCCCTTCAACTTCATCCTCAAGATGTAGATGGAGGAGTGCCACGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAAGAGAAAGTTGAAACACTCTCTGATGTCTTCCATTCATCACCAAAACGCTGTGATCCCTAAGGAAGCAACTGTGAACAACAGTGACTACCACTCCTTCCCCAATTTGTCTCCAAATTGGGAAGCTAATAATGCTGCCAATGGACGCTCCAACTTTTGTGCAATAGCCAGCATGAATCTATCTGCAGATTAA 1050 0.4581 MFPSSNYTSSGSYPRFPSSSSSASPYPSFTFLHPENSSASTTFLHDPLSVTFIPTNYHAPIPETLANWAVADCATAAMLNQDLGGALYGITKKPAKKTAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEFSSSSDGEVVSVIHQDQQQQQGMDFEEGKLKEPAYCVKAKMKESREKARARARERTSCKILCSGEGKVQELKKKCPATENHQILNQLKSPLQLHPQDVDGGVPRDDDFNVIEESIVIKRKLKHSLMSSIHHQNAVIPKEATVNNSDYHSFPNLSPNWEANNAANGRSNFCAIASMNLSAD* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1205 349 Pfam TCP family transcription factor 98 228 IPR017887 -
Vra4g1205 349 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 348 IPR005333 GO:0003700
Vra4g1205 349 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 8 348 - -
Vra4g1205 349 MobiDBLite consensus disorder prediction 1 20 - -
Vra4g1205 349 ProSiteProfiles TCP domain profile. 100 158 IPR017887 -
Vra4g1205 349 ProSiteProfiles R domain profile. 211 228 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1205 Vra-Chr4 19035879 19037816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1205 54 249 TCP Transcription Factor Family AT1G67260 39.000 5.35e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra4g1205 TCP 3.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1205 - - gsj:114424268 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1205 4 19035879 19037816 Vra7g2009 7 39598492 39600406 ECH
Vra4g1205 4 19035879 19037816 Vra4g1205 4 19035879 19037816 ECH
Vra4g1205 4 19035879 19037816 Vra1g1200 1 16061571 16063522 ECH