Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1200 ATGGCTTCAACCAACCCTTCTCCAAATGCTTCCCCTGTTGCAGTGCCTCCAGTTCTTGGTGGTATTTTATCACCACCACCTTCTTCATCTTCTCCAACCAATTCCTCCAACCCCCCATCATCTCTCAATTCTTCCCAGCCCAATCAAACACCCAATTCCCCTGCTCCTTCATCTCCCTCTGACCCTTCAGCTCCACCTCCTTCACCTCCTCAGGCAGTGCCTGTAACCCCTCCTCCTTCCATATCACTCTCTCCTCCACCATCTTCTCCACCACCACCAACTCTGCCCCCTCCTTCACCACCGGATTCTCCACCGCCATTACCACCAGCATCTCCAACGCCACCAGTTGTGACATCTCCCCCCTCACCACCTGCCACCACCACTGCTCCTCCTCCAGCTGAGCTTCCACCTTCCCCTCCAGTTTTGTCTCCACCATCTTCACCAACTGTTTCCCCTCCTCCCCAATCTCCTCCCGCTACAATTCCCCCTCCTTCTCAACCAATTTCACCATCTCCTCCTCCTCCTGCCAATGTTCCAAGGCCACCATCCACCGGTACTCCTCCACAGAAAGAAAGTCCTCCCAAAACTACTCCTTCACATGCACCTCCTCCATCAGTTTCTCAATCTCCTCCTAAGCCCCCTTCTTCTGATGTCCCCCCTCCATCCACATTGCCATCAACTCCTCCTTCAGTCCCTTCAGGATCTTCACCTCCAGCTTCTTTGCCTGACCCCCCAACCAATGAAACAGCCGTTGGGGGTCCACCGGTACCACTGCCGTCTCTTCCAACCGAGAAACCCACTGCTAGACCAACTAATGATGGTTCTAACGATGTAGCTACAAACAACACGCCTTCACATTCAGGTGGGTTAAGTGCTGGAGGATCCGTCGCCATTGGAATTGTAGTTGGTTTTATTGTCCTCAGTTTTCTTGTTATGGCCGTGTGGTTTGTACAGAAGAAGAAGAAGAAGGAAAAAGGATCAAGAGGTGGTTATGCTGCTCCTTCTCCATTTACCTCATCCCACAATTCAGGTACCTTATTCTTGAGGCCACAGTCTCCAGCCAACTTTGTAGCAGGTAGTGGATCTGGTAGTGATTTTGTGTATTCTCCATCAGAACCAGGTGGTGTAAGTAGCTCGAGATCATGGTTCACGTATGAAGAACTTATCCAAGCTACGAATGGATTTTCGGCACAAAATCTGCTGGGAGAAGGTGGATTTGGTTGTGTCTATAAAGGTTTACTCGTAGATGGAAGAGAAGTAGCTGTGAAACAGCTCAAAATTGGTGGCGGGCAAGGGGAACGTGAATTCAGGGCAGAAGTTGAGATAATCAGCCGTGTGCATCATCGTCATCTGGTTTCCTTGGTTGGTTACTGTATATCTGAACATCAGAGATTGCTTGTATATGACTATGTTCCCAACAATACTCTTCATTACCATCTCCATGGGGAAAATAGACCAGTTCTGGATTGGCCTACCAGAATTAAGGTTGCTGCTGGTTCAGCTCGAGGAATAGCTTACCTGCATGAAGACTGTCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTTGATCTCAACTATGAAGCTCGAGTTTCGGACTTTGGGCTTGCAAAACTGGCATTAGATTCAAATACACACGTGACAACTCGAGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAACTAACGGAAAAGTCTGATGTATATTCCTACGGTGTTGTGCTTTTGGAGTTAATTACAGGTAGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGTCTGGTTGAATGGGCTCGGCCTTTGTTGAGTGAAGCACTTGAGAAGGAGGACTTTGAAATCTTGGTGGATCCAAGACTGGGAAAGAACTACGACAGAAATGAAATGTTCCGGATGATTGAGGCTGCGGCAGCCTGTGTACGGCACTCGTCGGTGAAGAGGCCACGGATGAGTCAGGTGGTGAGAGCTTTAGATTCCTTAGACGAGTTTACGGATCTGAATAATGGAATGAAACCGGGGCAAAGTTCGGTGTTTGATTCTGCACAGCAATCTGCACAGATCAGAATGTTTAGAAGGATGGCTTTTGGGAGCCAAGATAGTTCAAGTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGAGATCAGGACTCAGCAACCATGTTTTCCCAAAACAAAACTGGGTCTTGGAATGTTTGA 2232 0.4807 MASTNPSPNASPVAVPPVLGGILSPPPSSSSPTNSSNPPSSLNSSQPNQTPNSPAPSSPSDPSAPPPSPPQAVPVTPPPSISLSPPPSSPPPPTLPPPSPPDSPPPLPPASPTPPVVTSPPSPPATTTAPPPAELPPSPPVLSPPSSPTVSPPPQSPPATIPPPSQPISPSPPPPANVPRPPSTGTPPQKESPPKTTPSHAPPPSVSQSPPKPPSSDVPPPSTLPSTPPSVPSGSSPPASLPDPPTNETAVGGPPVPLPSLPTEKPTARPTNDGSNDVATNNTPSHSGGLSAGGSVAIGIVVGFIVLSFLVMAVWFVQKKKKKEKGSRGGYAAPSPFTSSHNSGTLFLRPQSPANFVAGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHGENRPVLDWPTRIKVAAGSARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEARVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSYGVVLLELITGRKPVDASQPIGDESLVEWARPLLSEALEKEDFEILVDPRLGKNYDRNEMFRMIEAAAACVRHSSVKRPRMSQVVRALDSLDEFTDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSRDQDSATMFSQNKTGSWNV* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1200 743 SMART serkin_6 395 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1200 743 MobiDBLite consensus disorder prediction 265 290 - -
Vra4g1200 743 SUPERFAMILY Protein kinase-like (PK-like) 373 668 IPR011009 -
Vra4g1200 743 Gene3D Transferase(Phosphotransferase) domain 1 471 687 - -
Vra4g1200 743 MobiDBLite consensus disorder prediction 52 264 - -
Vra4g1200 743 PRINTS Proline rich extensin signature 4 16 - -
Vra4g1200 743 PRINTS Proline rich extensin signature 24 40 - -
Vra4g1200 743 PRINTS Proline rich extensin signature 44 56 - -
Vra4g1200 743 PRINTS Proline rich extensin signature 58 79 - -
Vra4g1200 743 PRINTS Proline rich extensin signature 85 101 - -
Vra4g1200 743 ProSiteProfiles Protein kinase domain profile. 395 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1200 743 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 85 718 - -
Vra4g1200 743 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 85 718 - -
Vra4g1200 743 MobiDBLite consensus disorder prediction 24 51 - -
Vra4g1200 743 MobiDBLite consensus disorder prediction 717 743 - -
Vra4g1200 743 Gene3D Phosphorylase Kinase; domain 1 372 470 - -
Vra4g1200 743 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Vra4g1200 743 Pfam Protein tyrosine and serine/threonine kinase 398 668 IPR001245 GO:0004672|GO:0006468
Vra4g1200 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Vra4g1200 743 MobiDBLite consensus disorder prediction 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1200 Vra-Chr4 18952192 18958155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1200 136 664 Trihelix Transcription Factor Family AT1G68690 55.970 3.28e-179 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vra4g1200 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1200 - - gmx:100784873 942.954