Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1184 ATGGGGATGCCAAGAGGAACAACTCTTCTCTTTTTCATATTGTTCTTCTTTTGGAGCTCCGCAGATGCTTTGCTTTCTCCTAAGGGAGTGAACTTCGAAGTGCAAGCCTTAATGAGCATAAAACGCTCTTTAGAGGATCCACATGGTGTTCTAGACAATTGGGATGGGGATGCAGTCGATCCATGTAGCTGGACTATGGTCACATGTTCTTCAGATAACTTGGTCGTTGGACTGGGCACTCCAAGTCAAAGTCTATCTGGTACTCTATCTCCGAGCATAGGCAACTTAACCAACCTTCAGATTGTGCTGCTACAGAATAACAACATAAGTGGATCAATCCCATCAGAGTTGGGAAAACTTCCTAAGCTTCAGACCCTTGATCTCTCAAACAACTTCTTCAGAGGGGAGATTCCTCAATCTCTGGGACACCTGAAAAGCCTCCAATACCTGAGGCTCAATAACAACACTCTTGTTGGTGAATGCCCAGAGTCTCTGGCTAACATGACCCAACTCAATTTTCTTGATTTGTCATACAACAATCTTAGTGGCCCGGTGCCCAGAATTTTAGCCAAATCATTCAGCATTGTTGGAAACCCCATTGTTTGTGCAACGGGAAAAGAGCCAAACTGTCATGGGATGACACTGATGCCTATGTCCATGAACTTGAACAATACTGAACATGCTTTAGAATCAGGCAGACCAAAAACTCATAAAATGGCAATTGCCTTTGGCTTGAGTTTGGGATGTCTCTGCCTCATAGTTATCGGTTTTGGAGGTGTTATTTGGTGGAGACACAAGCACAATCAACAAGCATTCTTCGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTCGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTTCTACTAACAACTTCAGCAGCAAAAACATACTAGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCTCTGATGGTACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCTATTGGAGGAGAGATTCAATTTCAGACAGAAGTTGAAATGATCAGCTTGGCAGTGCACCGAAACCTCCTCAGACTCTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCATACATGTCCAATGGCAGTGTTGCTTCCCGTCTCAAGGGTAAACCAGTGCTGGACTGGGGCACTAGGAAGCACATTGCTTTGGGAGCAGCAAGAGGACTACTGTACCTTCATGAGCAATGTGATCCAAAGATCATTCACAGGGATGTGAAAGCTGCAAACATATTGCTTGATGACTACTGTGAAGCTGTGGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGACTCACACGTCACGACTGCAGTGAGGGGCACAGTGGGGCATATTGCCCCAGAGTACCTTTCCACAGGACAGTCCTCTGAGAAGACTGATGTTTTTGGATTTGGCATTCTCCTCCTTGAATTGATCACAGGCCAGAGAGCTCTAGAGTTTGGAAAATCAGCCAACAACAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCTGGAGAAAAAGCTTGAAATGCTGGTAGACAAGGATCTGAAGAGCAACTATGACAGAATTGAACTTGAGGAAATGGTTCAAGTGGCTCTCTTATGTACTCAGTATCTTCCAGGGCATAGGCCTAAGATGTCTGAAGTGGTTCGCATGCTCGAAGGTGATGGACTAGCAGAAAGATGGGAAGCTTCACAAAGAGTTGACACAAGCAAGTTCAAACCCCAAGAGTCATCTTCATCAGATAGGTATTCTGATCTCACTGATGACTCTTTGTTGTTAGTCCAAGCCATGGAACTCTCAGGACCCAGATGA 1872 0.4428 MGMPRGTTLLFFILFFFWSSADALLSPKGVNFEVQALMSIKRSLEDPHGVLDNWDGDAVDPCSWTMVTCSSDNLVVGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNISGSIPSELGKLPKLQTLDLSNNFFRGEIPQSLGHLKSLQYLRLNNNTLVGECPESLANMTQLNFLDLSYNNLSGPVPRILAKSFSIVGNPIVCATGKEPNCHGMTLMPMSMNLNNTEHALESGRPKTHKMAIAFGLSLGCLCLIVIGFGGVIWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQISTNNFSSKNILGKGGFGNVYKGVLSDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKHIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANNKGAMLDWVKKIHLEKKLEMLVDKDLKSNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRVDTSKFKPQESSSSDRYSDLTDDSLLLVQAMELSGPR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1184 623 ProSiteProfiles Protein kinase domain profile. 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1184 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Vra4g1184 623 SUPERFAMILY L domain-like 33 305 - -
Vra4g1184 623 MobiDBLite consensus disorder prediction 590 604 - -
Vra4g1184 623 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Vra4g1184 623 MobiDBLite consensus disorder prediction 583 604 - -
Vra4g1184 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 623 - -
Vra4g1184 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Vra4g1184 623 Pfam Protein kinase domain 304 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1184 623 SMART serkin_6 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1184 623 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Vra4g1184 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Vra4g1184 623 Pfam Leucine Rich repeats (2 copies) 97 136 IPR025875 -
Vra4g1184 623 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 4 623 - -
Vra4g1184 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Vra4g1184 623 SUPERFAMILY Protein kinase-like (PK-like) 280 573 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1184 Vra-Chr4 18837902 18841666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1184 1 623 Receptor kinase-like Gene Family AT5G16000 77.778 0.0 998
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra4g1184 Pkinase 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1184 - - gmx:100798412 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1184 4 18837902 18841666 Vra4g1184 4 18837902 18841666 ECH
Vra1g1044 1 12534411 12538987 Vra4g1184 4 18837902 18841666 PCT