Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1183 ATGTTGGAGGGAGAAGCTACTGGCACGTGGGCGCGCGCGTGCGACACGTGCCGCTCCGCAGCCTCCACCGTCTTCTGCCGCGCCCACAACGCCTACCTCTGCGCCTCCTGCGATGGCCGCGTGCACCACGCGTCCTCCTCCTCTTGGCACGAGCGTGTGTGGGTCTGCGAGGCCTGCGAACGGGCCCCCGCGGCGTTTCTCTGCAAGGCCGACGCCGCCTCCCTCTGCTCCTCATGCGACGCCGACATCCACTCCGCGAACCCTCTCGCAAGCCGCCACCACCGCGTCCCCATCCTCCCCATCGCTGCCGGCCACCACTCTCACGTCGAAATCGACGTCGCCGACGACGACGATGGTGCTGACGTGGATGATGAAGACGAAACCGCTTCCTGGCTCTTGCTCAACCCTGTCAAAACTGGCACTGTCCCTAACAGCAACAATAATGGGTTCTTGTACAGTGGTGAGGTTGACGAGTATTTGGACCTTGTTGATAACTGTAACTCTTGTGGTGACAACAACCACTTCGCTGCAACTACCACTACTGCTACTACTGCTGATCATTACGCTCAGCACCATCATTTTGATGGTGTTTCTCAGAAGAGTTATGCCGGGGACAGCGTGGTTCCGGTTCAGCAGCACCACCATTTTCAGCTTGGCTTGGAGTTTGAGAATTCTAAAGCTGCCTTCAGTTACAATGGTTCTATTAGTCAAAGTATTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCGATGAGGGATGTCTCAATTTCCCATACAAGACCCCCCAAAGGGACGATTGACCTATTTTCTGGACCTCCCATTCAGATGCCTTCCCACTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAAACGATCAGGTATGCCTCGAGGAAGGCCTATGCAGAGACCAGACCCCGAATAAAGGGTCGTTTTGCCAAGAGAACAGATGTGGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATGACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1074 0.5363 MLEGEATGTWARACDTCRSAASTVFCRAHNAYLCASCDGRVHHASSSSWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAAGHHSHVEIDVADDDDGADVDDEDETASWLLLNPVKTGTVPNSNNNGFLYSGEVDEYLDLVDNCNSCGDNNHFAATTTTATTADHYAQHHHFDGVSQKSYAGDSVVPVQQHHHFQLGLEFENSKAAFSYNGSISQSISVSSMDIGVVPESPMRDVSISHTRPPKGTIDLFSGPPIQMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLMTEVGYGIVPSF* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1183 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 10 357 IPR045281 GO:0009909
Vra4g1183 357 Pfam B-box zinc finger 53 98 IPR000315 GO:0008270
Vra4g1183 357 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Vra4g1183 357 Pfam CCT motif 288 330 IPR010402 GO:0005515
Vra4g1183 357 ProSiteProfiles Zinc finger B-box type profile. 9 55 IPR000315 GO:0008270
Vra4g1183 357 CDD Bbox1_BBX-like 55 98 - -
Vra4g1183 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 10 357 - -
Vra4g1183 357 CDD Bbox1_BBX-like 13 55 - -
Vra4g1183 357 ProSiteProfiles CCT domain profile. 288 330 IPR010402 GO:0005515
Vra4g1183 357 SMART bboxneu5 51 98 IPR000315 GO:0008270
Vra4g1183 357 SMART bboxneu5 9 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1183 Vra-Chr4 18814275 18816755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1183 3 357 C2C2-CO-like Transcription Factor Family AT3G02380 55.285 4.07e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vra4g1183 zf-B_box 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1183 - - gmx:100301886 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1183 4 18814275 18816755 Vra4g1183 4 18814275 18816755 ECH
Vra1g1042 1 12516531 12518725 Vra4g1183 4 18814275 18816755 PCT