Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1178 ATGCAAGCCAGGGAGATCACAGGACTGAATTATTTACTCCCTTCAGACCCTTGTCCTTACCCTGGTCACTACAGCATGACTCAGAACACCATCCCCACATTTCAACTCCACAAACTCTCAAACCAGTTCTATGGTTTCCAAAACCCTCAGCAAATGGTTGCAGAATTCAGCCCCCCTCAGTCCTCATGCATCAGCAGCACCTCCACCTCTGATGAAGCAGATGAGCAGCAGCAAAGTCTCATCAATGAGAGGAAGCACAGGAGGATGATATCGAACCGTGAATCAGCACGCAGGTCACGCATGAGGAAGCAGAAGCACCTTGATGAACTCTGGTCACAGGTGGTTTGGCTCAGGAATGAAAACCACCAGCTTATGGACAAGCTGAACCATGTGTCTGAGTCACATGACAGAGTTTCTCAAGAGAATGTTCAGCTCAGAGAAGAAGCCTCAGAACTTCGCCAAATGATATGTGACATGCAGCTACATAGTCCATACCATGCTCCTTCTCTGTGCCCCATTGATGATGATGTCTCTCCCTATGTCAAATCTGATTCCTCCATCACCAGCTCCTCGAACCTGCTTGGCTGA 588 0.4847 MQAREITGLNYLLPSDPCPYPGHYSMTQNTIPTFQLHKLSNQFYGFQNPQQMVAEFSPPQSSCISSTSTSDEADEQQQSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDRVSQENVQLREEASELRQMICDMQLHSPYHAPSLCPIDDDVSPYVKSDSSITSSSNLLG* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1178 195 Gene3D - 82 137 - -
Vra4g1178 195 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 87 102 IPR004827 GO:0003700|GO:0006355
Vra4g1178 195 CDD bZIP_plant_GBF1 85 136 IPR045314 GO:0003700|GO:0006355
Vra4g1178 195 PANTHER BZIP TRANSCRIPTION FACTOR 1 195 - -
Vra4g1178 195 Pfam bZIP transcription factor 84 134 IPR004827 GO:0003700|GO:0006355
Vra4g1178 195 SMART brlzneu 80 144 IPR004827 GO:0003700|GO:0006355
Vra4g1178 195 Coils Coil 128 155 - -
Vra4g1178 195 MobiDBLite consensus disorder prediction 56 79 - -
Vra4g1178 195 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 195 IPR044521 -
Vra4g1178 195 SUPERFAMILY Leucine zipper domain 84 134 IPR046347 GO:0003700|GO:0006355
Vra4g1178 195 MobiDBLite consensus disorder prediction 56 76 - -
Vra4g1178 195 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 82 145 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1178 Vra-Chr4 18764913 18765929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1178 18 179 bZIP Transcription Factor Family AT3G30530 56.364 2.81e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra4g1178 bZIP_1 7.1e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1178 - - gmx:780548 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1178 4 18764913 18765929 Vra4g1178 4 18764913 18765929 ECH