Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1175 ATGACGATTGGTAGTTTAGCACCCAAGACAGAGAAGAAGAGATCAAGTAAGAACAAGGGAGTGGTTAATGAAAATGCACCCTTGTTGCCAAAAAGTCAGGTTCAGGGGAGTGATTCTGGGTTTGATGATTTCAATGGAGCTTCATTTTCTGGGGCTGTTTTTAACTTATCTACCACAATTATTGGTGCTGGAATTATGGCGTTGCCTGCAACCTTGAAACAGTTGGGGATGGTGCCTGGCCTTATTGCTATCATCATCATGGCCTTTTTGACAGAGAAGTCAATTGAGCTTTTGATTAGGTTTACCCGAGCAGGGAAGTCTGTTTCTTATGCTGGTCTCATGGGGGATTCCTTTGGGAAGTATGGAAAAGCTCTGGCGCAGATATGTGTCATAATCAATAACATCGGCGTGCTGATTGTTTACATGATTATAATTGGTGATGTGCTCTCTGGAACATCTTCAGGTGGAGATCATCACTACGGTATTCTTGAAGGATGGTTTGGTGTGGAGTGGTGGACAGGACGGACATTTGTTGTTCTTATTACAACACTCGCCATATTTGCACCCCTTGCGAGTTTTAAACGAATTGATTCATTGAGATTCACATCTGCCCTTTCAGTTGCACTAGCAGTTGTTTTTCTAGTCATTGCTGTGGGAATTGCAGTTGTCAAGATAATAAGTGGAGGCGTTGCGATGCCCAGACTCTTCCCAGTCACTACAGATGTGGCATCATTCTTTAAACTATTCACTGTAGTTCCTGTGTTTGTGACTGCCTATATCTGCCACTACAATGTTCACAGCATAGACAATGAGCTTGAGGACTCATCACAGATGCGAGGGGTTGTGCAAACTGCCCTTGTTCTATGCTCTTCTGTGTATGTAATGATAAGTTTCTTTGGTTTCCTCCTATTTGGAGAAGGAACTCTTGATGATGTGTTGGCCAATTTCGATACCAATCTTGGAATCCCTTTTGGTTCTGTGCTCAATGATGCTGTTCGTTTAAGCTACGCAGCTCACCTGATGCTTGTATTCCCAGTTGTTTTCTATCCATTGCGGCTCAATATAGACGGTCTCCTCTTCCCTTCATCAAGGCCTCTGGTTCTTGATAACTTGAGATTTGCATTTCTGACTATTTCCCTTATTGGTGTCATCTTTCTGGGAGCAAATTTCATACCCAGCATTTGGGATGCTTTCCAATTTACCGGAGCAACTGCCGCAGTCTGTATAGGATTCATTTTTCCAGCTGCCATCACTCTTAAGGACCGCTACAACATTGCAACTAGATCAGACAAGATTTTATCTATTGTTATGATAGTTTTGGCTGTCTTCTCTAATGTGGTGGCTATATATAGTGATGCCTATGCCTTGATCAAGAAGAACCAAACTTCACGCGAATGA 1398 0.4263 MTIGSLAPKTEKKRSSKNKGVVNENAPLLPKSQVQGSDSGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLKQLGMVPGLIAIIIMAFLTEKSIELLIRFTRAGKSVSYAGLMGDSFGKYGKALAQICVIINNIGVLIVYMIIIGDVLSGTSSGGDHHYGILEGWFGVEWWTGRTFVVLITTLAIFAPLASFKRIDSLRFTSALSVALAVVFLVIAVGIAVVKIISGGVAMPRLFPVTTDVASFFKLFTVVPVFVTAYICHYNVHSIDNELEDSSQMRGVVQTALVLCSSVYVMISFFGFLLFGEGTLDDVLANFDTNLGIPFGSVLNDAVRLSYAAHLMLVFPVVFYPLRLNIDGLLFPSSRPLVLDNLRFAFLTISLIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLKDRYNIATRSDKILSIVMIVLAVFSNVVAIYSDAYALIKKNQTSRE* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1175 465 PANTHER AMINO ACID TRANSPORTER AVT6A 9 464 - -
Vra4g1175 465 Pfam Transmembrane amino acid transporter protein 47 451 IPR013057 -
Vra4g1175 465 MobiDBLite consensus disorder prediction 1 23 - -
Vra4g1175 465 PANTHER AMINO ACID TRANSPORTER 9 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1175 Vra-Chr4 18736851 18740299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1175 3 465 Amino Acid or Auxin Permease AAAP Family AT3G30390 69.114 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1175 K14207 - gmx:100796345 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1175 4 18736851 18740299 Vra4g1175 4 18736851 18740299 ECH