Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1167 ATGCAGATATTCGTCAAAACTCTCACGGGGAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCAGATCAGCAACGTCTCATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTATAACATCCAGAAAGAGTCCACTCTCCATCTTGTCCTCCGTCTCCGCGGTGGCGCCAAGAAACGTAAGAAGAAGACATATACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCTGTCTTGCAGTTTTATAAGGTTGACGACTCCGGAAAGGTGCAGAGGCTCCGCAAGGAGTGCCCCAACGCTGAGTGCGGNGCTGGAACCTTCATGGCTAACCATTTCGATCGTCACTACTGCGGCAAGTGCGGTCTCACTTATGTATACCAGAAGGCGGATGCCTAA 468 0.5214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKADA* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1167 155 Gene3D - 1 80 - -
Vra4g1167 155 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vra4g1167 155 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vra4g1167 155 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vra4g1167 155 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vra4g1167 155 Gene3D - 81 155 IPR038582 -
Vra4g1167 155 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vra4g1167 155 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 146 - -
Vra4g1167 155 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Vra4g1167 155 SMART ubq_7 1 72 IPR000626 GO:0005515
Vra4g1167 155 PANTHER UBIQUITIN 1 146 - -
Vra4g1167 155 CDD Ubl_ubiquitin 1 76 - -
Vra4g1167 155 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Vra4g1167 155 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vra4g1167 155 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vra4g1167 155 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1167 Vra-Chr4 18688304 18689029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1167 1 152 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 97.368 5.40e-109 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1167 K02977 - gmx:100784307 280.026