Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1163 ATGGTTGATCAAGGTGATTTAGTTGTCATCTGCGTCTCTATTGGAGTGGCCCTTGGGATTTTGATAGCTTGCTTGGTATATTTTGGCACAAGGTGGTACAATAAGCGAACTCATCTTAGCCGATCTGCGAATGAGCCTAGTTTAACAGCTATCCCTATACGAACAAATGGATTAGGAACGAGCACTGACTTCAGTGCTTCACTCACCAGTTCCGTAGCCACTTATAAGTCACCAAATCCTCCAAAAAAATCACATCCAACTGGGCGGAATCATCAGAATAGAGATGGCTTTGCTTCTGTATCAGGCATTCTGAAGTACTCCTACAAGGAAATTCAGAAGGCCACACAAAATTTCACAAATATTTTGGGAGAAGGGTCATTTGGCACAGTTTATAAAGCCGTGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTTCTAACGGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGGTACTGCGTAGATAAAGGACAGCTTATGCTTGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATACGATGAAGAAAAGGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGTTGATATTTCACACGGAGTAGAATACCTTCATGAAGGGGCAGTACCGCATGTCGTACATCGTGATCTGAAATCTGCTAATATTCTGCTAGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGGCTCTCAAAGGAAGAGATCTTCGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGATCCAGCATACATTACCTCGAGCAAGTTCACGGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAGCTAATCACTGCCATCCATCCACATCAAAATTTGATGGAATATATCAACCTTGCTGCAATGGATTACGATGGTGTAGATGGGATTCTTGACAAGCAACTTGTGGGAAATTGCAACGTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCTAGGAAACGGCCATCTATAAGTGATGTTTCGCAGGCTATATTGGGGATTAAGCAAAGGCGTCTAATTAAAGAAGACACCATGTCATTTGCAAGCACCAACTTCTCCCGAAGCGTGAGTCAAATAGATGAGCAACAGGTTGAATTAAGTAGTATAATTACCATGAACCACAGGGAAATAGGGTGA 1269 0.4153 MVDQGDLVVICVSIGVALGILIACLVYFGTRWYNKRTHLSRSANEPSLTAIPIRTNGLGTSTDFSASLTSSVATYKSPNPPKKSHPTGRNHQNRDGFASVSGILKYSYKEIQKATQNFTNILGEGSFGTVYKAVMPTGEVVAVKMLAPNSKQGEKEFLTEVLLLGRLHHRNLVNLLGYCVDKGQLMLVYEFMSNGSLENLLYDEEKELSWDERLQIAVDISHGVEYLHEGAVPHVVHRDLKSANILLDHSMRAKVSDFGLSKEEIFDGRNSGLKGTYGYMDPAYITSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGNCNVEEVRQLAKIAHKCLHKSPRKRPSISDVSQAILGIKQRRLIKEDTMSFASTNFSRSVSQIDEQQVELSSIITMNHREIG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1163 422 MobiDBLite consensus disorder prediction 73 95 - -
Vra4g1163 422 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Vra4g1163 422 Gene3D Phosphorylase Kinase; domain 1 83 191 - -
Vra4g1163 422 CDD STKc_IRAK 122 373 - -
Vra4g1163 422 SUPERFAMILY Protein kinase-like (PK-like) 92 373 IPR011009 -
Vra4g1163 422 PANTHER OS01G0750732 PROTEIN 9 419 - -
Vra4g1163 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vra4g1163 422 Gene3D Transferase(Phosphotransferase) domain 1 192 399 - -
Vra4g1163 422 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1163 422 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 419 - -
Vra4g1163 422 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Vra4g1163 422 ProSiteProfiles Protein kinase domain profile. 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1163 Vra-Chr4 18655526 18661661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1163 111 375 Receptor kinase-like Gene Family AT1G67720 44.765 1.62e-68 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vra4g1163 PK_Tyr_Ser-Thr 4.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1163 - - gmx:100794239 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1163 4 18655526 18661661 Vra4g1163 4 18655526 18661661 ECH