Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1160 ATGGCTAGGTCTGCAAAAGGGCATCAAGAGGAATTGGAGGACGATGAAGAAGAAGAATTCCTAACTGCAAACACCTCTACCTCTCTCAACAAAGTGAAGGTGGACGAACCCAGCACGGGGAAGAGGGGGAACACGCATCGTTCGAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAATGAAAGGTTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGACAAGGCATCCTTCTTGTTGGAGGTTATTGAGTATATTCAGTTCCTACAGGACAAGTTACAAATTTATGAGAAGTCTTATGAAGGATGGAGTCAGGAGCCAACGAAGTTAATTCCATGGAGAAATCATCACGCGCCTGCAGAAAATACTACAGATCCTTCTCAAACTATACAAAATGGGTCTGTTGATGAGAAAAATAACAGTGTCTCTCCACTGTTTCCTGGAAATGTACCTAACCCTATGGAGTCTGACTTCTCAATGTTGACTGTTCAGAAGGGTCACATCCCTGGTTCATCTACAGAAGCAGTTCCCCTGACCATGCAAATGCGATTGGACATGTTTGATCCAGGTGTTAGCAGTGGTATGGCAACTCAACATCTTCAGGAATCTGTTTCTAACGTTGACATGCATTCCCCTACCCAGCCACAACTGTGGCTTGATAAATCAAACAAGGGCAACTATATTCTTCCGCATGATAGTACAATGAAGGAACAGGAGGAGCTAGTGATTGAATCTGGATCAGATAGCATTTCTAGTGCCTATTCTCAGGGAATTTTAGATACTCTCACGCAAGTGCTGCAGTCTTCCGGGGTAGATATGTCCCAGACTAATCTCTCGGTGCAAATTGATGTTGGTAGACGAGCAAATGCTGGATTGATCCCGTCTGCATATAGTTCAAAGGTTCATGAAAATCAATTTGAGAGCAATCCAGCAATATCAGTTTCCGGATTTGATTACTGCAATATTGAATCCGAACAAAGTTCAAAGAGGCTCAGACAAGAAGCAAGCTAG 1029 0.4295 MARSAKGHQEELEDDEEEEFLTANTSTSLNKVKVDEPSTGKRGNTHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQDKLQIYEKSYEGWSQEPTKLIPWRNHHAPAENTTDPSQTIQNGSVDEKNNSVSPLFPGNVPNPMESDFSMLTVQKGHIPGSSTEAVPLTMQMRLDMFDPGVSSGMATQHLQESVSNVDMHSPTQPQLWLDKSNKGNYILPHDSTMKEQEELVIESGSDSISSAYSQGILDTLTQVLQSSGVDMSQTNLSVQIDVGRRANAGLIPSAYSSKVHENQFESNPAISVSGFDYCNIESEQSSKRLRQEAS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1160 342 SMART finulus 51 101 IPR011598 GO:0046983
Vra4g1160 342 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 341 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vra4g1160 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 123 IPR036638 GO:0046983
Vra4g1160 342 PANTHER TRANSCRIPTION FACTOR BIM3 1 341 - -
Vra4g1160 342 MobiDBLite consensus disorder prediction 35 61 - -
Vra4g1160 342 Coils Coil 92 112 - -
Vra4g1160 342 Gene3D - 43 116 IPR036638 GO:0046983
Vra4g1160 342 MobiDBLite consensus disorder prediction 122 147 - -
Vra4g1160 342 CDD bHLH_AtBIM_like 44 120 - -
Vra4g1160 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Vra4g1160 342 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Vra4g1160 342 MobiDBLite consensus disorder prediction 126 147 - -
Vra4g1160 342 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1160 Vra-Chr4 18633095 18636883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1160 3 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 42.628 6.46e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra4g1160 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1160 - - pvu:PHAVU_008G025500g 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1160 4 18633095 18636883 Vra4g1160 4 18633095 18636883 ECH