Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1157 ATGGAGGTTGTTTTGGCGTCGTCGTCTCTAGACGGCGGAATAGGGTGCTGGGATCTTCACACCGGCGCGGAGCAGCTCCGCTATAAATCTTGCTCCTCCCCTTCTCACGGCCTTGTCGCCGTCGGTCCTCGCTTCATCGCCTCCTCTCAGCTTCGAGAACCTTCAGCAACATCTGGTTCCGTTCTCTTCTGGTCCTGGTCCAAGCCTCAAGTTGAAGTGAAGAGCTTTCCCGCTGAACCTATTAAGCCCCTTGCTTCTAATCACCTGGGAACCTTCATTGCTGGTGGAGCTTTGTCTGGGGATATTTACTTGTGGGAAGTTGAAACCGGTAGATTGCTTAAGAAGTGGCATGCACATTTAGGGGCGGTTACTTGTCTGGTTTTTTCTGAAGATGACTCGCTGTTGGTTTCTGGTTCTCGAGATGGAACCGTAAGAGTTTGGTCTCTCTTCATGATATTCGATGAATTCAGAGGTCAGCTGGCTAATAATCTTTATGAGTATAGTTTTTCCGGGCACACCCTGTGTGTGACTGATGTTGTGATTGGTAATGGAGGGTGCAATGCAATTATTGTGTCAGCTTCTGAGGATAAAACTTGCAAGGTATGGAGCTTATCGAGGGGAACACTACTAAGAAATATAGTATTCCCTTCACATATTGATTCCATTGCATTGGATCCAGCTGAACATGTCTTTTATGCTGGCAGTAGAGATGGAAAAATATTTATTGCGGCACTTAGCACTGAAAGCGTTGCTAGTAATAATTGTGGGATGCATATCATTGGTTCTTTTTCTAACCAGAGCAAGACAGTTACTTGCTTAGCATATAGCATGAGTGGGAATTTGTTAATATCCGGGTCAGAGGATGGAATGGTTCGTGTTTGGGATGCAAGAACTCGAACCAATGTCCGCGTGTTCAAACATGCTAAAGGGCCTGTAAATAATATTCTTGTTGTTAGACGAGAAAACTCAAGTAATCACATATCTTCTAATGTACAAACATCATCAAGAAAGCAAGGGGCTAATTTACCCCCTCCATTGGAAAAATATGCAAATTCCATACATGAAGACTCAGATATGAACACTACGATCACTCTTGGGGGTGACAGGAGTTCCGTAGATCTTTCATACCTCAGTTCTCATGTGATATCTAATTACGTTAAGGAACTTCAGCATCAAGGATCAGCTGCTGCTTCTGAAATGGAAACGGAGAAACTAAAACATGATTACCAAAGGGCAATGCAAATGGCTAACCAATGGAAGAAAATGTATGAAAACTTAAATAAATTTTGTGTGAAAGAACTGTTGGATGGTAGTCAAGCCAGAACCTTAGATGAAAATCACAATTAA 1347 0.4306 MEVVLASSSLDGGIGCWDLHTGAEQLRYKSCSSPSHGLVAVGPRFIASSQLREPSATSGSVLFWSWSKPQVEVKSFPAEPIKPLASNHLGTFIAGGALSGDIYLWEVETGRLLKKWHAHLGAVTCLVFSEDDSLLVSGSRDGTVRVWSLFMIFDEFRGQLANNLYEYSFSGHTLCVTDVVIGNGGCNAIIVSASEDKTCKVWSLSRGTLLRNIVFPSHIDSIALDPAEHVFYAGSRDGKIFIAALSTESVASNNCGMHIIGSFSNQSKTVTCLAYSMSGNLLISGSEDGMVRVWDARTRTNVRVFKHAKGPVNNILVVRRENSSNHISSNVQTSSRKQGANLPPPLEKYANSIHEDSDMNTTITLGGDRSSVDLSYLSSHVISNYVKELQHQGSAAASEMETEKLKHDYQRAMQMANQWKKMYENLNKFCVKELLDGSQARTLDENHN* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1157 448 MobiDBLite consensus disorder prediction 323 340 - -
Vra4g1157 448 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Vra4g1157 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Vra4g1157 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Vra4g1157 448 Gene3D - 156 429 IPR015943 GO:0005515
Vra4g1157 448 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 312 IPR011047 -
Vra4g1157 448 Pfam WD domain, G-beta repeat 261 295 IPR001680 GO:0005515
Vra4g1157 448 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515
Vra4g1157 448 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Vra4g1157 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Vra4g1157 448 Gene3D - 2 155 IPR015943 GO:0005515
Vra4g1157 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Vra4g1157 448 MobiDBLite consensus disorder prediction 323 343 - -
Vra4g1157 448 SMART WD40_4 162 203 IPR001680 GO:0005515
Vra4g1157 448 SMART WD40_4 206 244 IPR001680 GO:0005515
Vra4g1157 448 SMART WD40_4 69 106 IPR001680 GO:0005515
Vra4g1157 448 SMART WD40_4 256 295 IPR001680 GO:0005515
Vra4g1157 448 SMART WD40_4 109 148 IPR001680 GO:0005515
Vra4g1157 448 PANTHER WD-REPEAT PROTEIN 18 1 434 IPR045227 -
Vra4g1157 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Vra4g1157 448 PANTHER WD REPEAT-CONTAINING PROTEIN 18 1 434 - -
Vra4g1157 448 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Vra4g1157 448 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Vra4g1157 448 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1157 Vra-Chr4 18594492 18600596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1157 88 305 U-box Gene Family AT2G33340 27.854 1.10e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1157 K14829 - gmx:100775776 744.962