Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1150 ATGGGTTCAGTTTGTTGCTGCTTTAATGTTAATGACGTTGAAGATTATTTGAATCCAAATAGTCCTGTATACAGGAACTGTATGTGTTTCGGTTGTTTCATACAGTACTTTTTGACTGTGTATGCCTCAATATTCCGTAGAGGGGAAGTGCATGCGGTTCCTTCATCTATACAGGGTGCAACACCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATTTATCGTTCTCCTCCAAGGCCGTTGCCTTATGATGCGGATCCCAGGTTTTTCCGTTCACAGCGCGATGGACTAGTGTCAAGACGTGGCAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGCAAGTCCACCATGAGACTTTCATCAGCAAAGCTTACAACTGGAGATGGGGTTATCTATTCATCATCGGAAGAGGAGGATTGCTGTCCGACTTGTCTAGAAGAATACACTGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATATATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 594 0.4209 MGSVCCCFNVNDVEDYLNPNSPVYRNCMCFGCFIQYFLTVYASIFRRGEVHAVPSSIQGATPMTSTASLDNSLSDIYRSPPRPLPYDADPRFFRSQRDGLVSRRGKWNDTSEDGSKEYRKSTMRLSSAKLTTGDGVIYSSSEEEDCCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1150 197 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 106 - -
Vra4g1150 197 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 106 196 - -
Vra4g1150 197 Pfam RING-H2 zinc finger domain 141 187 IPR024766 GO:0008270
Vra4g1150 197 SMART ring_2 147 187 IPR001841 -
Vra4g1150 197 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 106 196 - -
Vra4g1150 197 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 106 - -
Vra4g1150 197 SUPERFAMILY RING/U-box 142 194 - -
Vra4g1150 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 194 IPR013083 -
Vra4g1150 197 ProSiteProfiles Zinc finger RING-type profile. 147 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1150 Vra-Chr4 18554492 18559050 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1150 1 195 C3H Transcription Factor Family AT5G38895 52.535 7.87e-79 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1150 - - gmx:100788192 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1150 4 18554492 18559050 Vra4g1150 4 18554492 18559050 ECH