Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1147 ATGTTTCTGAAATGTTTTGGTGAGTCAAGTTCATCCGGAAGACAATATCCAACAGTAATAGAAGAGTTGTGTCATCATTTTTCTCTTGCTGATATTCAGAAATCAACCAACAATTTTGATCATAAAAGACTAATTGCACGAGGATGGGCTAAAGCATACAAAGGTTGTCTCCAGCATATTGATGGTTCTGATTACGCAGTCACAGTGAGGCGATTTAACGTGGAAGACAGTGAAATATTCAAAAGAGAAGTAGAGTTACTGTGTCAGCTTCATCACCCAAATTGTGTGTCTATTGTAGGATTTTGCAACCACAAAAAAGAGAAGATCATTGTGCAAGAATACAATAGGTCTCTACTTTACTACCTCCTAGATGATGTTAGGGAAGCACTGCCATGGAAGAAAAGGATAGAGATTTGCATAGGAGCAGCACGTGGACTACACTACCTTCATGCCGGACTCAAGCGCACCATCATTCACCGCAACATCAATTCTGCCAGCATTCTTTTGGATGACAACATGCACCCAAAACTCTCAAGTTTCGGCCATAGCATAATGGGAGCACATTTCAAAGAAAAGTCAAAACCAATACGAACGGATCCTGTAGAAGTTGTAACGGGAATAAGATTTTTTCCAATACCAAAAGAACTTAAGGGGAAGTGTGTTGAGGAGAATATTGATCCGAAAATCAAAGGAAAGATTGCACCAGAGTGTTGGCAAATGTTTATAGACATAGCCTTGAGATGCATAAAAGATGACCCTGACGAACGACCAGAAATGGGAGAAGTGGAGGTGCAACTTGAGCTTGCTCTATTGTTGCAGGAACAAGCAGATGTCACAAATATCGATAATGATTATACCTTATTCTCCAAAACTATTATTATCCCAAAATCAGAGGGGAACTTTCAGTATGTCATTGGCCTAAGAGAACAGGAAACCGTATGCAGTGACAAGGAGGGAAAATTTGTTATGCAGAAAAGCCAAGTGGCAAGTGATCTGCAAGCTGAGGCCATTAGGAGGAAAAGGCAACGAAGAGAGAATATTTTATGGAAGGACTTGGTGCAGTGA 1065 0.4038 MFLKCFGESSSSGRQYPTVIEELCHHFSLADIQKSTNNFDHKRLIARGWAKAYKGCLQHIDGSDYAVTVRRFNVEDSEIFKREVELLCQLHHPNCVSIVGFCNHKKEKIIVQEYNRSLLYYLLDDVREALPWKKRIEICIGAARGLHYLHAGLKRTIIHRNINSASILLDDNMHPKLSSFGHSIMGAHFKEKSKPIRTDPVEVVTGIRFFPIPKELKGKCVEENIDPKIKGKIAPECWQMFIDIALRCIKDDPDERPEMGEVEVQLELALLLQEQADVTNIDNDYTLFSKTIIIPKSEGNFQYVIGLREQETVCSDKEGKFVMQKSQVASDLQAEAIRRKRQRRENILWKDLVQ* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1147 354 ProSiteProfiles Protein kinase domain profile. 39 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1147 354 Gene3D Transferase(Phosphotransferase) domain 1 204 290 - -
Vra4g1147 354 Gene3D Transferase(Phosphotransferase) domain 1 115 203 - -
Vra4g1147 354 PANTHER TYROSINE KINASE FAMILY PROTEIN 10 201 - -
Vra4g1147 354 PANTHER TYROSINE KINASE FAMILY PROTEIN 219 289 - -
Vra4g1147 354 Pfam Protein tyrosine and serine/threonine kinase 50 184 IPR001245 GO:0004672|GO:0006468
Vra4g1147 354 PANTHER OS07G0166700 PROTEIN 219 289 IPR045272 GO:0004714|GO:0006468
Vra4g1147 354 PANTHER OS07G0166700 PROTEIN 10 201 IPR045272 GO:0004714|GO:0006468
Vra4g1147 354 Gene3D Phosphorylase Kinase; domain 1 7 114 - -
Vra4g1147 354 SUPERFAMILY Protein kinase-like (PK-like) 14 271 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1147 Vra-Chr4 18531245 18538238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1147 8 277 Receptor kinase-like Gene Family AT3G51550 33.542 1.45e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g1147 PK_Tyr_Ser-Thr 3.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1147 - - var:108327132 630.557