Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1146 ATGGGATCAGTTTGTTGCTGTTTTAATGTTGATGATTTTGAAGATTATGTGAATCCAAATAGTCCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCCTACAGAACGTTTTGACTGTGTATGCATCAATATTCCGTAGAGGGGAAGCGCATGCAATTCCTTCATCTTTACAGGGCACAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCCTTGCCTTATGATTCAGACCCCAGGTTTTTCCGTTCACAGCGAGATGGATTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAGTTTGGGTGGTAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATATCGTAAGTCCTCTGTGAGACTTTCATCAGCAAAACTTACGACTGGAGCTGGGGTTGTCTATTCATCGTCGGAAGTGGAGGATGTCTGTCCAACGTGTCTTGAAGAATACACTGAAGAGAATCCAAAGATATTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAATTGTCCTGTTTGTGGGAAGGAGATGGTATTCGATGAAACGACTTAA 678 0.4115 MGSVCCCFNVDDFEDYVNPNSPVYRNCMCLSCFLQNVLTVYASIFRRGEAHAIPSSLQGTASMTSTASLDNSLSDMYRSPPRPLPYDSDPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDVDADSESLSLGGKWNDTSEDGSKEYRKSSVRLSSAKLTTGAGVVYSSSEVEDVCPTCLEEYTEENPKILTKCSHHFHLGCIYEWMERSDNCPVCGKEMVFDETT* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1146 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Vra4g1146 225 SMART ring_2 175 215 IPR001841 -
Vra4g1146 225 MobiDBLite consensus disorder prediction 72 148 - -
Vra4g1146 225 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Vra4g1146 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 224 - -
Vra4g1146 225 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 224 - -
Vra4g1146 225 SUPERFAMILY RING/U-box 171 222 - -
Vra4g1146 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Vra4g1146 225 MobiDBLite consensus disorder prediction 91 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1146 Vra-Chr4 18516991 18524266 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1146 1 224 C3H Transcription Factor Family AT5G15790 59.740 3.94e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1146 - - gmx:100788192 438.343