Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1143 ATGGGAAGGGGTAGGGTTCAGCTCAAACGGATCGAGAACAAAACAAGCCAGCAAGTCACCTTTTCCAAACGGAGAACGGGACTTCTCAAGAAAGCCAACGAAATCTCTGTGCTTTGTGATGCTCAAGTCGCTCTGATTATGTTCTCTACCAAAGGCAAGCTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGATGTCTTGGAACGTTACGAGAGATATACTCATACAGCACTCACTGGAACCAACAATGACTCGCAGGGCAATTGGTCTTTCGAATATATCAAGCTCACCGCAAAAGTTGAAGTCTTGGAGAGGAACGTAAGGAATTTCTTGGGAAATGGGCTGGATCCCTTGAGTTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCTATCTCAGAGCTGCATAAAAGGGCAAGAACGTTACAAGAGCAAAACAGCAAGCTAGCAAAGATGAAAGAGAAAGGGAAGACATTGACTGAACGTCCACAGAGCGTACCAGAAACTCTTGGCCAAAATTCAACCAATCTCAACTTAGCTTCTCCACAGCTATTACCACCACAAAGACTTGTTCCTTCTTTAACTCTCAGTGGGCCATTGCAAGGAAGAGCAACGATGGAAGAAATGGGTGAACCTCAAACAGTGCCAACTGGCCATTCACTCATCCCACCATGGATGCTGCATATCTGA 741 0.4494 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALTGTNNDSQGNWSFEYIKLTAKVEVLERNVRNFLGNGLDPLSLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLAKMKEKGKTLTERPQSVPETLGQNSTNLNLASPQLLPPQRLVPSLTLSGPLQGRATMEEMGEPQTVPTGHSLIPPWMLHI* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1143 246 MobiDBLite consensus disorder prediction 168 201 - -
Vra4g1143 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra4g1143 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra4g1143 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra4g1143 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra4g1143 246 PANTHER MADS BOX PROTEIN 1 222 - -
Vra4g1143 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra4g1143 246 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 222 - -
Vra4g1143 246 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra4g1143 246 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vra4g1143 246 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vra4g1143 246 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Vra4g1143 246 MobiDBLite consensus disorder prediction 179 201 - -
Vra4g1143 246 Coils Coil 123 179 - -
Vra4g1143 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra4g1143 246 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1143 Vra-Chr4 18499072 18506003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1143 1 218 MADS-box Gene Family AT1G26310 52.863 2.20e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra4g1143 K-box 3.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1143 K09264 - gmx:100786580 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1143 4 18499072 18506003 Vra7g1961 7 39097684 39102896 ECH
Vra4g1143 4 18499072 18506003 Vra4g1143 4 18499072 18506003 ECH
Vra4g1143 4 18499072 18506003 Vra1g0932 1 10915639 10921537 ECH