Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1142 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACCTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAACTTTATGAGTTCTGCAGCAGCACTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGAGCAGTGGAAGTTAGCAAACCTGCTAAAGAGCTCGAGCAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGAACCCAAAGAAACCTTCTAGGGGAAGACTTGGGTCCACTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCTTCTCTAAAGCAAGTGAGGTCCACCAAGACACAATTCATGCTGGATCAGTTGGCTGATCTTCAAAACAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATCAACTCAAGAAATCACTACAGGCAATCATGGGAAGCGGGTGATCAAAGTATGCAATATGGTGGTCCACAGAATTCTCAGTCTCAGGGCTTCTTCCAGCCACTGGAATGCAATCCCACCTTGCAGATTGGTCCTGATTACAGGTACAATGTTGTCGCTTCAGATCAGATAACTGCAACAACTCCAGCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA 750 0.452 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNHYRQSWEAGDQSMQYGGPQNSQSQGFFQPLECNPTLQIGPDYRYNVVASDQITATTPAQQVSGFIPGWML* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1142 249 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vra4g1142 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra4g1142 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vra4g1142 249 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra4g1142 249 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra4g1142 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra4g1142 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra4g1142 249 PANTHER MADS BOX PROTEIN 1 235 - -
Vra4g1142 249 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vra4g1142 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra4g1142 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra4g1142 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra4g1142 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 235 - -
Vra4g1142 249 Coils Coil 125 145 - -
Vra4g1142 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1142 Vra-Chr4 18486040 18491898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1142 1 249 MADS-box Gene Family AT5G15800 73.864 1.48e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra4g1142 K-box 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1142 K09264 - gmx:100786066 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1142 4 18486040 18491898 Vra7g1960 7 39087175 39092169 ECH
Vra4g1142 4 18486040 18491898 Vra4g1142 4 18486040 18491898 ECH
Vra1g0932 1 10915639 10921537 Vra4g1142 4 18486040 18491898 PCT