Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1141 ATGAAGCATATATGTGTAATAGAAACCGCAGATGTATACGTAGGATCGTGTGAAATAATGGTAGCTATGATGGGTTGCCTGGCTACAGAAAAAGGGTGGAAGAAAGGCCCTTGGACTGGTGAAGAAGACAAGTTGCTAAGTGAATATGTTAGCTTGTATGGGGAAGGTAGGTGGAGTTCCGTGGCAAAGTTTACAGGATTAAATAGGAGTGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAAGCCTGGTCTGAAGAAAGGTCAATTAACACCTTTGGAAGAAGGAACCATTATGGAACTACATGCAATTTTGGGTAACAAGTGGTCTACGATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACGCACTTCGGGAAGAGGGAGAAATCCAAACACAAGAAGCTACAAAGGCGACAGAAGGAACAACAACAACAACCTGAGAAGTGTGATTTGAAAAGCATCATGTGCCACAAGGATACCATGAACGGAACAAAATCGTTTGAGACACAAAATAGTAAGCTACAAGAAATTGGTTTGATGAACCCAACAATAGATGACCAATACAATAATACCGTTCCTTCCATGCACGAGGGTTTCTCATCCACGTGGCCGGACACTTTGGTGGATGATGGCTTATGGTTTGGATTATGGGACTTTGATGAACCACTGATGAGTTTTGCAGATTATGTTAACCAGTTTAGCAAATGTGTCATGCCAAATGAAGGCACGCAAAGTCATGTTAAAACTTCTTGTTTTGATGATATATTTGGATGA 801 0.4107 MKHICVIETADVYVGSCEIMVAMMGCLATEKGWKKGPWTGEEDKLLSEYVSLYGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPLEEGTIMELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKSKHKKLQRRQKEQQQQPEKCDLKSIMCHKDTMNGTKSFETQNSKLQEIGLMNPTIDDQYNNTVPSMHEGFSSTWPDTLVDDGLWFGLWDFDEPLMSFADYVNQFSKCVMPNEGTQSHVKTSCFDDIFG* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1141 266 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vra4g1141 266 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Vra4g1141 266 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Vra4g1141 266 Gene3D - 91 162 - -
Vra4g1141 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Vra4g1141 266 PANTHER MYB TRANSCRIPTION FACTOR 22 243 - -
Vra4g1141 266 CDD SANT 92 133 IPR001005 -
Vra4g1141 266 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Vra4g1141 266 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Vra4g1141 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 243 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra4g1141 266 Gene3D - 34 87 - -
Vra4g1141 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Vra4g1141 266 SMART sant 87 135 IPR001005 -
Vra4g1141 266 SMART sant 34 84 IPR001005 -
Vra4g1141 266 CDD SANT 37 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1141 Vra-Chr4 18478223 18479312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1141 32 230 MYB Transcription Factor Family AT3G30210 52.113 3.96e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g1141 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1141 K09422 - gmx:100785540 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1141 4 18478223 18479312 Vra4g1141 4 18478223 18479312 ECH