Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1139 ATGTTTATGAAATGTTTAGGCAACACAAGTTCTTCAAAGAAACAGTATCAAACAGTAATAGAAGAATTGTGCCATCAGTTTTCTCTTGCAGAGCTTAGAAAGTCAACCAACAACTTCGATAGAAAGAGACTAATTGGTCGTGGAGGATTTGGTGAAGTATATAAAGGATATCTCCAACATTATGCTGCTTCTAATTACATAGTAGCAGTGAAACGGTTTTCTGTGGAACACAGTGAGGTGTTCAAGAATGAAATAGAGTTGCTCTGCCAGCTTCGCCACCCTAATTGTGTGTCTCTTATAGGATTCTGCAACCACAAGAAAGAGAAGATCGTTGTGTACGAGTACATGTCAAATGAATCTCTAGATCGACACCTACAACGTGGGGAACTGTCATGGAAGCAAAGGTTGGAAATTTGCACAGGAGCAGCGCGTGGACTACACTACCTTCATGCAGGAGCTAAGCGCACCATCATTCACCGTATTGTCAAACCTCGAACCATCCTTTTGGACGATAACATGCACCCAAAACTCACAGGTTTCTGCATTAGCGTAAAGGGGTCACGATTGATGTCAAAACCAAAGCCAATTAAAGTTGATGTTGTGGCTGGTACTCCTGGATACATGGCTAGAGAGCTTTTCACTGACGATGCCATCACAGATAAATCTGATGTTTATTCTTTTGGTATGGTTCTGCTAGAGGTCGTGTGTGGAAGGAAATACATAAGAACGCCAGCTGAAAGAGAATTTCTGGAGAAGCCTGTTGAGGAAAAAGTTGATGCGAGCATCAAGGGAAAGATTGCACCAAAGTGTTGGGAAGTCTTCATAGATATCACCAAAAGATGCGTGATGTATGAACCAGATGAGCGACCAACAATGGGTGAAGTAGAGGTACAACTAGAGTATGCTTTGTCGTTGCAGGAACAAGCTGATATCACAAATACTAATGGTGATTATACCTTATTTTCCACCACAGTTATTCACCCAGGAGCGGAACTGATAGACAGCACAGAAGACAGTGATACTGAAGAAATGTAA 1035 0.4174 MFMKCLGNTSSSKKQYQTVIEELCHQFSLAELRKSTNNFDRKRLIGRGGFGEVYKGYLQHYAASNYIVAVKRFSVEHSEVFKNEIELLCQLRHPNCVSLIGFCNHKKEKIVVYEYMSNESLDRHLQRGELSWKQRLEICTGAARGLHYLHAGAKRTIIHRIVKPRTILLDDNMHPKLTGFCISVKGSRLMSKPKPIKVDVVAGTPGYMARELFTDDAITDKSDVYSFGMVLLEVVCGRKYIRTPAEREFLEKPVEEKVDASIKGKIAPKCWEVFIDITKRCVMYEPDERPTMGEVEVQLEYALSLQEQADITNTNGDYTLFSTTVIHPGAELIDSTEDSDTEEM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1139 344 PANTHER OS07G0166700 PROTEIN 10 322 IPR045272 GO:0004714|GO:0006468
Vra4g1139 344 Gene3D Transferase(Phosphotransferase) domain 1 116 323 - -
Vra4g1139 344 ProSitePatterns Protein kinases ATP-binding region signature. 45 71 IPR017441 GO:0005524
Vra4g1139 344 PANTHER TYROSINE KINASE FAMILY PROTEIN 10 322 - -
Vra4g1139 344 Gene3D Phosphorylase Kinase; domain 1 3 115 - -
Vra4g1139 344 Pfam Protein tyrosine and serine/threonine kinase 42 298 IPR001245 GO:0004672|GO:0006468
Vra4g1139 344 SUPERFAMILY Protein kinase-like (PK-like) 12 299 IPR011009 -
Vra4g1139 344 ProSiteProfiles Protein kinase domain profile. 39 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1139 Vra-Chr4 18463861 18464971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1139 9 310 Receptor kinase-like Gene Family AT3G51550 41.693 6.82e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g1139 PK_Tyr_Ser-Thr 5.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1139 - - gmx:100305395 471.855