Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1138 ATGTTTCTCAGTTGTTTGGGTATGAGCTGTTGGAAGCCCACATCGAATACAGACTCATCTCTGAGACAGTTTTCAACGGTGATACAAGAGCTGTGTCAACAATTTTCTCTCGCCGATCTAAGAAAAGCCACCAATAACTTCGATCTAAACAGAGTAATAGGAAATGGAATGTTCAGTGAAATATATAAAGGCTATCTACAGCATAATGGTGCCTCTGATTACACAGTCGCAATAAAGCGATTTAACGATCAAGGATGCGAAGCGTTTAACAAGGAAATAGAATTGTTATGCCAGCTTCGTCACCCCAGATGTGTGTACCTCATAGGATTCTGCAACCACGAAAATGAGAAGATTCTTGTATACGAGTACATGTCCAATGGATCTCTAGATGAACACCTACAAGATGGTAAACTATCATGGAAGAAGAGTCTAGAAATATGCGTAGGAGTAGCATGTGGACTACATTACATTCACACCGGAGCTAAACGTTCCATCTTTCACTGTATCCTTGGTACTAGTACCATCCTTTTGGATGACCACATGGAGCCAAAACTCGCTGGTTTCGGTGTTAGCGTGCAGGGATCACGTTTTATGTCAAAGCAGAAGCAAATCAATGCAGAGCATTTTATGGGTACTTGGGGCTTCATGGCTACGCAGTTTATCAGGGATCGTACCATCACAGCTAAATGGGATGTTTTCTCATTTGGTTTGGTTCTACTTGAAGTTGTGTGCAGGAGGATGTTTTATGTAATAAACCTGGCTGAAAAAGAATTTCTGGAGAATCCTATTGAGGAGAAAATTGATCCGATTGTCAAAGGAAAGATTGCTCCAGATTGTTGGCAAGTCTTTGTAGATGTCATGGTAAATTGCTTGAAGTATGAACCAGATGAGCGACCTACAATGGGTGAAGTAGAGGTGCAACTTGAGCACGCTCTATCGATGCAGGAACAAGCAGATATCACAAACTCCAACTGTGATTATACCTTATTGTCCAAAACCATTATTCCCCTCGGAGTGAAACAGTACGTGATACTTGAGAAATGTAACTGA 1050 0.4124 MFLSCLGMSCWKPTSNTDSSLRQFSTVIQELCQQFSLADLRKATNNFDLNRVIGNGMFSEIYKGYLQHNGASDYTVAIKRFNDQGCEAFNKEIELLCQLRHPRCVYLIGFCNHENEKILVYEYMSNGSLDEHLQDGKLSWKKSLEICVGVACGLHYIHTGAKRSIFHCILGTSTILLDDHMEPKLAGFGVSVQGSRFMSKQKQINAEHFMGTWGFMATQFIRDRTITAKWDVFSFGLVLLEVVCRRMFYVINLAEKEFLENPIEEKIDPIVKGKIAPDCWQVFVDVMVNCLKYEPDERPTMGEVEVQLEHALSMQEQADITNSNCDYTLLSKTIIPLGVKQYVILEKCN* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1138 349 PANTHER TYROSINE KINASE FAMILY PROTEIN 18 331 - -
Vra4g1138 349 SUPERFAMILY Protein kinase-like (PK-like) 27 308 IPR011009 -
Vra4g1138 349 PANTHER OS07G0166700 PROTEIN 18 331 IPR045272 GO:0004714|GO:0006468
Vra4g1138 349 Pfam Protein tyrosine and serine/threonine kinase 49 307 IPR001245 GO:0004672|GO:0006468
Vra4g1138 349 ProSitePatterns Protein kinases ATP-binding region signature. 53 79 IPR017441 GO:0005524
Vra4g1138 349 ProSiteProfiles Protein kinase domain profile. 47 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1138 349 Gene3D Phosphorylase Kinase; domain 1 9 123 - -
Vra4g1138 349 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1138 Vra-Chr4 18460997 18462246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1138 3 319 Receptor kinase-like Gene Family AT3G51550 37.838 1.33e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g1138 PK_Tyr_Ser-Thr 8.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1138 - - pvu:PHAVU_008G028600g 519.235