Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1135 ATGGCTCTGTTCATGGCAATTCTTGGCGTTGTTGTGTTGGTGCTCTGTTTTTGCTCTGTTCTCTTGAAGTGGAATGGAGTCAGATACAGGAGGAAAGGCTTGCCTCCTGGCGCAATGGGTTGGCCGGTTTTTGGGGAGACAACTGAGTTTCTCAAGCAAGGTCCAAACTTCATGAAGAACAAGAGGGCAAGGTATGGCAGTTTTTTCAAATCTCACATTCTGGGATGTCCTACCATTGTATCCATGGATCCGGAGCTGAACAGATTCATACTGATGAATGAAGCAAAAGGGCTTGTTCCTGGGTACCCACAATCCATGTTAGATATCTTAGGCACACGCAACATTGCAGCTGTTCATGGCTCCACTCATAAGTACATGAGAGGGGCACTGCTTTCAATTATTAGCCCCACCTTGATCAGGGATCAGCTTTTACCAAAAATTGATGAGTTCATGAGAACCCACTTGATTGATTGGGATAACAAAGTCATAAACATCCAGGAGAAAACTAAAGAGATGGCTTTTCTCTCTTCCCTGAAGCAGATTGCTGGTATGGAATCCAGCTCAATAGCTCAACCCTTCATGACAGAGTTCTTCAAACTAGTTTTGGGAACACTCTCTTTGCCTATTAACCTTCCTGGCACAAATTATCGCGGGGGATTGCAGGCAAGGAAAAGTATTATCAGCATTCTGAGTCAGTTGCTGAAGGAAAGGATAGCATCCCAAGAATCCCACGTGGACATGCTGGGTTGTTTGATGAATAGAGATGAAAACCGATACAAACTAACTGATGAGGAAATCATTGATTTAGTTATTACTATTATGTATTCTGGTTACGAAACTGTTTCAACCACATCGATGATGGCAGTGAAGTATCTCCATGACCATCCCAAAGTTCTTGAAGAAATCAGAAAAGAGCATTTTGCCATAAGGGAAAGGAAAAAGCCAGAGGATCCAATTGACTGTAATGATCTCAAGTCAATGAGGTTTACTCGTGCGGTGATTTTCGAGACCTCGAGATTAGCAACAATAGTTAACGGGGTTCTAAGAAAAACAACTCACGACATGGAACTAAACGGGTATCTGATTCCTAAAGGGTGGAGGATATATGTATACACGAGAGAGATCAATTATGATCCATTTCTGTATCATGATCCAATGACCTTCAATCCATGGAGATGGCTGGGTAACAGTCTGGAGTCACAAAGCCACTTCTTGATTTTTGGAGGGGGTACCAGACAATGTCCAGGGAAGGAGTTAGGGATAGCAGAAATTTCCACTTTCTTGCACTACTTTGTAACAAGATATAGGTGGGAAGAAGTAGGAGGAGATAAACTAATGAAGTTTCCTAGAGTTGTGGCACCAAATGGACTGCACATAAGGGTCTCATCTTTTACTAGCTAG 1401 0.4261 MALFMAILGVVVLVLCFCSVLLKWNGVRYRRKGLPPGAMGWPVFGETTEFLKQGPNFMKNKRARYGSFFKSHILGCPTIVSMDPELNRFILMNEAKGLVPGYPQSMLDILGTRNIAAVHGSTHKYMRGALLSIISPTLIRDQLLPKIDEFMRTHLIDWDNKVINIQEKTKEMAFLSSLKQIAGMESSSIAQPFMTEFFKLVLGTLSLPINLPGTNYRGGLQARKSIISILSQLLKERIASQESHVDMLGCLMNRDENRYKLTDEEIIDLVITIMYSGYETVSTTSMMAVKYLHDHPKVLEEIRKEHFAIRERKKPEDPIDCNDLKSMRFTRAVIFETSRLATIVNGVLRKTTHDMELNGYLIPKGWRIYVYTREINYDPFLYHDPMTFNPWRWLGNSLESQSHFLIFGGGTRQCPGKELGIAEISTFLHYFVTRYRWEEVGGDKLMKFPRVVAPNGLHIRVSSFTS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1135 466 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS E-class P450 group I signature 265 282 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS E-class P450 group I signature 285 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS E-class P450 group I signature 331 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS E-class P450 group I signature 371 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS E-class P450 group I signature 404 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS E-class P450 group I signature 414 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 407 416 IPR017972 GO:0005506|GO:0016705
Vra4g1135 466 Pfam Cytochrome P450 35 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PANTHER CYTOCHROME P450 26 10 462 - -
Vra4g1135 466 PANTHER CYTOCHROME P450 FAMILY PROTEIN 10 462 - -
Vra4g1135 466 Gene3D Cytochrome P450 26 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS P450 superfamily signature 276 293 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS P450 superfamily signature 332 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS P450 superfamily signature 405 414 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 PRINTS P450 superfamily signature 414 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1135 466 SUPERFAMILY Cytochrome P450 28 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1135 Vra-Chr4 18434625 18438895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1135 82 464 Cytochrome P450 AT5G38970 69.010 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1135 K09590 - gmx:100785414 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1135 4 18434625 18438895 Vra4g1135 4 18434625 18438895 ECH