Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1130 ATGGCCTTCTCTCTGTTACCAAAATTAACTCCTTGCATTTGTTTCTTGGTTCTGCTATCTTCAACTTGCTTAACTTCAACAGATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATGTTATCTCCTGGACCCCTGATGGATATGTAGCTGTTGTTACAATGAACAACTTCCAAAGATATCGTCCTATTACTTTACCTGGCTGGTATCTAAGGTGGACATGGGCAAAAAAAGAGGTAATATGGAGCATGATAGGAGGGCAGACCACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGGTGTTCCACATTCTTGTATGAAAAATCCAACAGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGTTGCAAAGGTGGGGTGCTTAGTTCATGGGTGCAGGATCCAAGCAGAGCAGCAGCATCTTTTCAACTTAGTGTTGGTGGAGCTGGAACCACAACCAGAACTGTTAAACTCCCAACAAACTTCACCTTGGAAGCACCTGGACCACGTTATACTTGTGGACAAGCTAAGATTGTCAGACCCACTAAATTCATTACTCCAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGCAGGTGGTATGCAGATACTCACAGTTTCTAACTCATAAAACTCCCACTTGCTGCCTCTCACTTTCATCTTTCCATAATAATACTATTGTGCCTTGTCCAACATGTTCGTGTGGCTGCCGAAGTAACTCGTCTCAGTCAGGGAAATGTGTAAATCCAGGTACACCACATTTGGCCTCATTTGTTTCTGGCTTCGGGAAGAACGAATTTTCACCTACTGTTCAATGTACCAATCACATGTGTCCAATCAGAGTTCACTGGCATGTTAAGCTTAACTCCGAGAAGTACTGGCATGTGAAGATTACTATTACTAATTTGAATTACAGGATGAATTATTCTGACTGGAACTTAGCCATTCAACACCCAAACTTTGACCATCGGACTCAAGTTTCCGGTTTCACCTATAAGCTAATGACTCCTTATGCTTCAATAAATGATGCAGCAATGTTGTGGGGAATGAAGTCCCAGCATAATGATGTTCTCATCCAAGCTGGCCCGAGTGGGAAGGTTGAAGGAGATGTAGTCTTCCGAAAGGATAAAGCTACTGTAAGGTTTGATAAGGGATGGGGTTTCCCTCGAAGGATCTACTTCAATGGTGACACTTGTATTATGCCACCACCCAGTGCTTACCCCTTTTAG 1263 0.4252 MAFSLLPKLTPCICFLVLLSSTCLTSTDAYDPLDPNGNITIKWDVISWTPDGYVAVVTMNNFQRYRPITLPGWYLRWTWAKKEVIWSMIGGQTTEQGDCSKFKGGVPHSCMKNPTVVDLLPGTPYNQQIANCCKGGVLSSWVQDPSRAAASFQLSVGGAGTTTRTVKLPTNFTLEAPGPRYTCGQAKIVRPTKFITPDKRRVTQALMTWQVVCRYSQFLTHKTPTCCLSLSSFHNNTIVPCPTCSCGCRSNSSQSGKCVNPGTPHLASFVSGFGKNEFSPTVQCTNHMCPIRVHWHVKLNSEKYWHVKITITNLNYRMNYSDWNLAIQHPNFDHRTQVSGFTYKLMTPYASINDAAMLWGMKSQHNDVLIQAGPSGKVEGDVVFRKDKATVRFDKGWGFPRRIYFNGDTCIMPPPSAYPF* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1130 420 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0031225
Vra4g1130 420 PIRSF COBRA 2 420 IPR006918 GO:0010215|GO:0031225
Vra4g1130 420 PANTHER PROTEIN COBRA 7 420 IPR006918 GO:0010215|GO:0031225
Vra4g1130 420 PANTHER COBRA-LIKE PROTEIN 7 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1130 Vra-Chr4 18410090 18413159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1130 13 420 COBRA Gene Family AT3G02210 66.015 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1130 - - gmx:100783820 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1130 4 18410090 18413159 Vra4g1130 4 18410090 18413159 ECH