Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1129 ATGGCCCAGTCCTTCGGTCAGACCGAGATTAACTGGGACAAGCTAGATAAAACTAGGTTCTATGTCGTAGGAGCTGGGCTCTTTACAGGTGTTTCGGTGGCACTTTACCCCATTTCGGTTGTGAAAACTAGGCTGCAGGTTGCCACAAAGGATGCCGTAGAGAGAAGTGTGTTTTCTGTTGTGAAAGGACTACTTAAAACAGATGGCATCCCTGGTCTGTATAGAGGGTTTGGCACAGTTATCACTGGTGCTATTCCTGCCAGAATAATTTTCCTCTCCACTCTAGAGACCACAAAGGTGGCTGCTTTCAGAATGATTGAACCGTTTCGACTATCTGAAACTACCCAAGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGATTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAGTACAGCGGGGGTTTGGATGTTGCTCGCAAGGTTTTAAGATCTGATGGCATCCGGGGATTGTATAGAGGGTTTGGTCTGTCTGTTATGACTTATTCACCTTCTAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCGTCATTTGGAGGTTCCTGGGTCATGATACCAAATATGATGAACACGCTCCTAGTCTGCAGAAAATAATGTTGGTTCAGGCTATGGGAGGGATTATTGCTGGTGCATCTTCATCTTGCATAACAACCCCATTGGATACTATCAAGACACGATTACAGAACGCGTATGCGCAAAAGATGAATAGATGA 795 0.4553 MAQSFGQTEINWDKLDKTRFYVVGAGLFTGVSVALYPISVVKTRLQVATKDAVERSVFSVVKGLLKTDGIPGLYRGFGTVITGAIPARIIFLSTLETTKVAAFRMIEPFRLSETTQAAIANGVAGMTSSIFAQSVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLGHDTKYDEHAPSLQKIMLVQAMGGIIAGASSSCITTPLDTIKTRLQNAYAQKMNR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1129 264 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Vra4g1129 264 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 7 257 - -
Vra4g1129 264 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 264 IPR018108 -
Vra4g1129 264 Gene3D Mitochondrial carrier domain 154 264 IPR023395 -
Vra4g1129 264 Gene3D Mitochondrial carrier domain 10 153 IPR023395 -
Vra4g1129 264 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 257 - -
Vra4g1129 264 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Vra4g1129 264 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Vra4g1129 264 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Vra4g1129 264 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Vra4g1129 264 SUPERFAMILY Mitochondrial carrier 13 258 IPR023395 -
Vra4g1129 264 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Vra4g1129 264 Pfam Mitochondrial carrier protein 227 261 IPR018108 -
Vra4g1129 264 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1129 Vra-Chr4 18402038 18407294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1129 10 255 Chloroplast and Mitochondria Gene Families AT5G15640 76.113 3.63e-137 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1129 K15121 - gmx:100782750 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1129 4 18402038 18407294 Vra4g1129 4 18402038 18407294 ECH