Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1126 ATGTTTCCTAAATGTTTGGGTTTCTGCGGTTGGAAGCACACAAGTTCATCTCAGAAACAGTATCCAACGGTAATACAAGAGTTGTGCCATCAATTTTCTCTCACTGATATTAAGAAATCCACAAACAACTTTGCCAGTACCAGACTAATTGGATATTCAAGCTTTGGTAAAGTATACAAAGGTCGCCTCCAACTCCTGGATGGTACTGAATATTCAGTTGCAATAACGCGATTGTTTGCAGAAGAAGGCAATGAAGGACGCGACTGGTTTAAGAAAGAAGTAGAGTTGCTCTGTCAGCTTCGTCACCCTAATTGTGTGTCTCTTATAGGATTCTGCAACCACAAGAAAGAGAAGATTCTTGTGCATGAGTACACGTCCAATGGATCTCTAAATCAACACATACTAAGAGGTGGGAAAACAGAAGCACTGTCATGGAGGAAAAGGATAGAGATATGCATAGGAGTAGCTCGTGGACTACACTACCTTCACGCTGGACTCAAGCGCAACATTATTCACCGTGACGTTTGTCTCAGAAACATTCTTCTGGACGGCCACATGGAACCAAAACTTGCAGGTTTCTGCCGTAGCATTCAGGGAGCACACTTTATGTCAAAGCCAAAAGCAATTCCAATAGATGAATTTACTTGGGGTAGTTATGGCTACCATCCTATACACGACTTCAGAGACACTACCGTCACAGATAAATGTGATGTTTTCACATTTGGTTTGCTTCTTCTAGAAGTAGTGTGTGGAAGAAGGCATTCTGATATGAGAAGAGTGGATGGATTTCTGGAGAAGCCTGTTGAGGAGAATATTAATTTGAATATCAAAGGAAAGATTGTGCCAGATTGTTGGAAAGTCTTTATAGATATCATCCAAAGATGTGTGAATTATGAAGCAGATGAGCGACCAACTATGGGTGAGATTGAGGTGCAACTTGAGTATGCTCTGTCGTTGCAGGAACAAGCAGATATCACAAACATCGATGGTGATTACATCTTATTGTCTAAAACCATTATTAACCCAAGATGA 1032 0.4089 MFPKCLGFCGWKHTSSSQKQYPTVIQELCHQFSLTDIKKSTNNFASTRLIGYSSFGKVYKGRLQLLDGTEYSVAITRLFAEEGNEGRDWFKKEVELLCQLRHPNCVSLIGFCNHKKEKILVHEYTSNGSLNQHILRGGKTEALSWRKRIEICIGVARGLHYLHAGLKRNIIHRDVCLRNILLDGHMEPKLAGFCRSIQGAHFMSKPKAIPIDEFTWGSYGYHPIHDFRDTTVTDKCDVFTFGLLLLEVVCGRRHSDMRRVDGFLEKPVEENINLNIKGKIVPDCWKVFIDIIQRCVNYEADERPTMGEIEVQLEYALSLQEQADITNIDGDYILLSKTIINPR* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1126 343 PANTHER OS07G0166700 PROTEIN 14 336 IPR045272 GO:0004714|GO:0006468
Vra4g1126 343 SUPERFAMILY Protein kinase-like (PK-like) 19 317 IPR011009 -
Vra4g1126 343 ProSiteProfiles Protein kinase domain profile. 44 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1126 343 ProSitePatterns Tyrosine protein kinases specific active-site signature. 170 182 IPR008266 GO:0004672|GO:0006468
Vra4g1126 343 Gene3D Phosphorylase Kinase; domain 1 8 124 - -
Vra4g1126 343 PANTHER TYROSINE KINASE FAMILY PROTEIN 14 336 - -
Vra4g1126 343 Gene3D Transferase(Phosphotransferase) domain 1 125 334 - -
Vra4g1126 343 Pfam Protein tyrosine and serine/threonine kinase 47 312 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1126 Vra-Chr4 18387432 18388960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1126 6 324 Receptor kinase-like Gene Family AT3G51550 36.471 1.55e-61 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g1126 PK_Tyr_Ser-Thr 3.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1126 - - gmx:100305395 416.387