Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1125 ATGAAGGGAAATGTAGACTCCGATGCCTATGTAGAGTGGAAATTATCGATGGACCCAACTTGCACACGAACTGCTTTAAGAACCGTTCTCTTCTTCTTCCTTATGTGGTGCCTCTCTTTCCTTTCAACAGCAGACGATATTTATCATCCCACTGACCTCTTTAGCATAAGCTGTGGCTCATCCACCAACTTCTCCACTCAAGACACTCGGAATTGGACTTCAGACAATCACTTCCTTTCTCCAACCAACCCCTCGGTCGCTGCTCCTTCACTCACACCATCTACCATCCAGGGTCCTTACACCCATGCTCGTCTCTCTTACTCCTCATTCACTTACTCATTCCCTCTCACACAAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCTACTTCATACCAAAACTTCCCTCGCTCCCTATCCTCTTTCTCAGTCCAAGCAGGCCCCTACACCCTTCTACAAGATTTCAATGCTTCACTCAACGCCGATGCCGATGATGACCCTAGCCACCCTCACATCTTGTTCAAAGAGTATTTCGTTTACTTTGGAGACGGTGAGAACCTGACTATAACCTTCTTTCCCAGTTCTACTGATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCCATGCCCCCTTATCTCTACTACACCGATCCTCACTCCACAGAGCAGCCGCAATTTGTTGGCACAATGAATCCACATGTCACTGAGCACAAATTTGCTCTCGAGACCATGTTCAGGTTGGTCGTTTCCGCTGAAATTCCTTCCTCAGGGGACACGGGTATGCTCAGAACGTGGAGACCTGACATCAAGTACGTAACTACTCAATATTATCAACCAGTTGATTATGCGAAAATTAAAAAGCTGACGTTCATTACAACCTATAACTACACGGCACCAGACCAAGTGTACAGAACCGTTCGGAGTATGGGACGTAATGGCTCTATCAACATGGGTTTCAATCTCACATGGCAGCTTCCTGTTGATTCTGGCTTCATCTACATTATACGGTTACACTTTTGCCAGCTTGATCCGAGGGTTAACAACACTGGTGACTTGATTTTCAACATCATCATAGCGGATCAGTTGGCAAGCAACTGGACAGACCTTCTCATGTGGACTGATAATCAGAGGGGTGTACCGGTGGTTAAAGACTACGTAGTTTCCATCTTAGCCCCAGATAATCAGAAAAAGGCATATCTTTCTGTGAAATTACACCCTCACGATAAAAGCTTGATCAAGGACGCACAACTAAACGCAATTGAACTCTTCAAAATCAGCGACCCAACAGGTAATCTCGCTGGGCCGAACCCAGACCTGCCTCCATTATCAAAAACTAAAAAGAGGAGAACCCCTGCCGCCGTTGCAGGGGCAGTTTCAGGTGTCCTTTTGTTGTCCTTTATTGTCGCCTTTTTCCTCATCAAACGCCAGAAGAACGTCGTTGACAACAAGGGTCCCAATAAAAAGGAAGGAACTTCTCGGAGCAGCGGCTTATTACTGATACCGACCGCCCTCTGCCGACAGTTCTCAATGGCCGAAATGAAAGTCGCAACCAACAACTTCGACAAAGTCTTCGAGGTTGGCGTGGGAGGCTTCGGCAACGTGTACAAAGGTCACATCGACAAAGGCTCAACTACTGTCGCAGTCAAAAGGCTTAAACCGGGTTCTCGCCAAGGTATTCGCGAGTTCAAGAACGAGATCCAAATGCTGTCTCAACTTTGTCACCCCAATATCGTTTCCCTCATTGGTTACTGTTACGAGAACAACGAGATGATCCTCGTTTACGATTTCATGAATCACGGCAACCTCCGTGACCATCTCTACGACACTGATAACCCGTCTCTGTCGTGGAAACGTAGGCTCCAGATATGCATAGGTGTTGCCCGAGGATTGCATTATCTGCATACAGGTGTGGAGCAGGTGATCATTCACCGTGACGTGAAGAGCAGCAATATCTTGTTGGATGAAAAATGGGTGGCGAAGGTTTCAGATTTCGGATTATCCCGAATTGGGGGGCCCAGTGGTTCTTCGATGAGTATGGTGAGCGTGAACACTGAGGTGAGAGGTAGTATTGGATATTTGGACCCAGAATATTACAAGCGATACCTTTTGACGGAGAAGTCTGACGTGTACTCACTTGGAGTGATGTTGTTGGAGGTGGTATCTGGGAGGCAGCCTTTGCTCCCTGGGGAGGAAAAGCAACGAATTTCACTTGTTAATTGGGCGAAACATTGCTATGAGAAGGGAACTCCGAATGAGATTGTGGATACAGAACTCAAGGGCCAGGTAGCACCTCAGTCTCTGCGCAAATTTGTTGAGGTTGCATTCACCTGTTTGCTTGAAGATGGGACTCAACGACCTTCCATGAACGATGTCGTTGAGCTGTTGGAGTATGCTCTTCAGCTTCAGGACGGTGTTGTTAATGGTGCGTTGCAGAGTTCTCTTAATTATGAAGATTGTAACACCTCCAAAAACAGCATTATTTAG 2487 0.4672 MKGNVDSDAYVEWKLSMDPTCTRTALRTVLFFFLMWCLSFLSTADDIYHPTDLFSISCGSSTNFSTQDTRNWTSDNHFLSPTNPSVAAPSLTPSTIQGPYTHARLSYSSFTYSFPLTQGPKFIRLFFYSTSYQNFPRSLSSFSVQAGPYTLLQDFNASLNADADDDPSHPHILFKEYFVYFGDGENLTITFFPSSTDSYAFINGIEIVSMPPYLYYTDPHSTEQPQFVGTMNPHVTEHKFALETMFRLVVSAEIPSSGDTGMLRTWRPDIKYVTTQYYQPVDYAKIKKLTFITTYNYTAPDQVYRTVRSMGRNGSINMGFNLTWQLPVDSGFIYIIRLHFCQLDPRVNNTGDLIFNIIIADQLASNWTDLLMWTDNQRGVPVVKDYVVSILAPDNQKKAYLSVKLHPHDKSLIKDAQLNAIELFKISDPTGNLAGPNPDLPPLSKTKKRRTPAAVAGAVSGVLLLSFIVAFFLIKRQKNVVDNKGPNKKEGTSRSSGLLLIPTALCRQFSMAEMKVATNNFDKVFEVGVGGFGNVYKGHIDKGSTTVAVKRLKPGSRQGIREFKNEIQMLSQLCHPNIVSLIGYCYENNEMILVYDFMNHGNLRDHLYDTDNPSLSWKRRLQICIGVARGLHYLHTGVEQVIIHRDVKSSNILLDEKWVAKVSDFGLSRIGGPSGSSMSMVSVNTEVRGSIGYLDPEYYKRYLLTEKSDVYSLGVMLLEVVSGRQPLLPGEEKQRISLVNWAKHCYEKGTPNEIVDTELKGQVAPQSLRKFVEVAFTCLLEDGTQRPSMNDVVELLEYALQLQDGVVNGALQSSLNYEDCNTSKNSII* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1125 828 Gene3D - 244 427 - -
Vra4g1125 828 Gene3D - 52 210 - -
Vra4g1125 828 CDD STKc_IRAK 527 797 - -
Vra4g1125 828 PANTHER OS07G0166700 PROTEIN 46 822 IPR045272 GO:0004714|GO:0006468
Vra4g1125 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Vra4g1125 828 Gene3D Transferase(Phosphotransferase) domain 1 598 811 - -
Vra4g1125 828 SMART serkin_6 521 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1125 828 Gene3D Phosphorylase Kinase; domain 1 506 597 - -
Vra4g1125 828 ProSitePatterns Protein kinases ATP-binding region signature. 527 550 IPR017441 GO:0005524
Vra4g1125 828 Pfam Malectin-like domain 56 426 IPR024788 -
Vra4g1125 828 Pfam Protein tyrosine and serine/threonine kinase 526 796 IPR001245 GO:0004672|GO:0006468
Vra4g1125 828 SUPERFAMILY Protein kinase-like (PK-like) 497 797 IPR011009 -
Vra4g1125 828 ProSiteProfiles Protein kinase domain profile. 521 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1125 828 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 46 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1125 Vra-Chr4 18382684 18385504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1125 39 821 Receptor kinase-like Gene Family AT3G51550 42.943 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g1125 Malectin_like 1.5e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1125 - - gmx:100780062 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1125 4 18382684 18385504 Vra4g1125 4 18382684 18385504 ECH