Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1124 ATGTTTCTCAAATGTCTGAGCTTCAGCTGTTCCAAGAACACATCTCAGAGAAATTATCCAACAATTATACAAGAGTTGAGCCTTCAATTTTCTCTCTCCCATCTTACCAAATCAACCAACAACTTTGATCCAAAAAGGTTAGTTGGCAGTGGAGCATTTTGCAATGTATATGAAGCTTCTCTCCAACGTAGTGACGGCTCTCCTTATACAGTCGCAATAAAGAGATTTATGGTAAAAGACAGTGATATCTTCAAGAACGAAATAGAGTTGCTCTGCCAGCTTCGTCACCCTAATATCGTCTCTCTTGTAGGATTCTGCAACCACAAGAAAGAGAAGATTATTGTGTACGAATACCTGTCCAATGAATCTCTTTATCAACACATACAAAGTGGGAAACTGTCATGGAAGAAGAGGTTGGAGATCTGCATAGGAGCAGCACGTGGACTGCACTATCTTCACGCTGGAGCCAAGCGCACCATCATTCATCGCGACATCAAACCTAGCAACATTCTTTTGGATGCAAACATGGAGCCAAAGATTTCAGGTTTTGGTCTTAGCGTACAGGGACAGCGTTTTATGTCAAAGCCAAAGCCAATTAAAGTAGATTCTGTTGCGGGTACTATTGGCTACATCGCTGCGGAGCAAATTGAGAACCTGACCATCACAGATAAAACCGATGTTTATTCATTTGGTATGGTTCTATTAGAAGTTGTGAGTGGAAAGACATATATGAATTTAATACAAGAAGAGGAAGTATTTGAAAGGCCGGTTGAAGAGAAAGTTGATCCGAAAATCAAAGGAAAGATTACACCTGAGTCTTGGCAAGTCTTTATAGATATCTTGCAAGGATGCTTGAAATACGAAGTAGATGAGCGACCAACAATGGGTGAGGTAGAGCTGCAACTTGAGCATACTCTGTCGTTGCAGGAACAAGCGGATATCACAAACATCCATGGTGATTATGTTTTATTGTCTAAAACCATTATTAACTTAAAGCCTGAGTTAGAAGATGAAGATATCGGTATAACAGAAGACAGTGATTCAGAAGAGATGGGTAATTACTAG 1065 0.4009 MFLKCLSFSCSKNTSQRNYPTIIQELSLQFSLSHLTKSTNNFDPKRLVGSGAFCNVYEASLQRSDGSPYTVAIKRFMVKDSDIFKNEIELLCQLRHPNIVSLVGFCNHKKEKIIVYEYLSNESLYQHIQSGKLSWKKRLEICIGAARGLHYLHAGAKRTIIHRDIKPSNILLDANMEPKISGFGLSVQGQRFMSKPKPIKVDSVAGTIGYIAAEQIENLTITDKTDVYSFGMVLLEVVSGKTYMNLIQEEEVFERPVEEKVDPKIKGKITPESWQVFIDILQGCLKYEVDERPTMGEVELQLEHTLSLQEQADITNIHGDYVLLSKTIINLKPELEDEDIGITEDSDSEEMGNY* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1124 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vra4g1124 354 PANTHER TYROSINE KINASE FAMILY PROTEIN 12 325 - -
Vra4g1124 354 Gene3D Phosphorylase Kinase; domain 1 5 118 - -
Vra4g1124 354 Pfam Protein tyrosine and serine/threonine kinase 46 300 IPR001245 GO:0004672|GO:0006468
Vra4g1124 354 Gene3D Transferase(Phosphotransferase) domain 1 119 323 - -
Vra4g1124 354 PANTHER OS07G0166700 PROTEIN 12 325 IPR045272 GO:0004714|GO:0006468
Vra4g1124 354 ProSiteProfiles Protein kinase domain profile. 42 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1124 354 SMART serkin_6 42 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1124 354 SUPERFAMILY Protein kinase-like (PK-like) 17 302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1124 Vra-Chr4 18377911 18379423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1124 9 313 Receptor kinase-like Gene Family AT3G51550 39.938 4.30e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vra4g1124 PK_Tyr_Ser-Thr 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1124 - - gmx:100812131 444.506