Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1123 ATGGGCACAACTTACAGACCAATTGCTTTGCGAAACATGCTCTTCTTCCTCCTCTCCTTGTGCCACCCTTACTTTTCCATAGCAGACGTTATTTACCGTCCCGTTGAGCTTTTCACCGTAAACTGTGGCTCTGCTATAAACTTCACTCTCGATGGTCGAAACTGGACTGGAGATAGTAATACGAAATTCCTCTCCGAAAGCAAGGACTCAGTTACTGTTCAAGCAGACACACAATCAACAATACAGGGACCTTACACTTATGCTCGTCTCTCTCACTTCCAATTCACCTACTCCTTCCCCGTCACCACACAAGGCCCCTTCTTTCTTCGTCTCTTCTTCTACTCAACTTCATACCAAATGTTTGACCGCCACAAAGCCAATTTCTCAGTCCAAGCAGGCCCATACACCCTCCTTCAACATTTCAATCCTTCCCTATATGCTGAAGCTGATGACGACCCAACCCACTCCGACATCTTGTTCAGAGAGTACTGTATCTACCTCCAACATGATCAGAGGCTCGACATAACCTTCGCTCCAAGTACCACAGAGTCCTACGCTTTCATAAATGGAATCGAGATTGTTTCAATGCCCTCTTATCTATACTACTCCAACCCTAATTACACTGTTCCTGACGACATCACTAAATTGCCACAATTTGTTGGTCACAACCAAGTATATATAATTACAAATAACTCTGCTCTCGAGACAAAGCACCGATTGAAAGTTGGAGGAGCACAAATCTCCCCGTCACAGGACACTGGCATGCTCAGGACCTGGGATACGGATGATAAATACCTAATTACTGACAGTGGACCATCTACTGATTATGCGAAAAAAACTAATCTCAGCTTCGTTCAGATTCCTAACTACACGGCACCGGACCAAGTCTACCGCTCCGTAAGGAATATTGGAATGAATCCCTTTAAGAACCTCACATGGCAGCTTCCCGTTTATTCTGGCTTCTTCTACTTGCTAAGGTTACACTTTTGTCAGCTTAACCCGGAGGTTCAAGACCCCGGTGACCAAATGTTCTACATCTTCATTCAGGATCAGTTGGCTGAAAGAGGGGCAGACATTCTCAAGTGGAGCGACAACCAGAAGGGTGTACCAGTGGTTAAAGATTACGCAGTTTACATTCCAGGAAATAGGGAAAAGGTATATCTTTCACTGGAAATGCATCCTAATAGTATGAGCTCCATTCAGGATGCACAACTCAATGCTATTGAAGTTTTCAAAATCAACGACACAACAGGTAGTCTCGCTGAACCGAACCCAGACCCTCCTCCACAAACCACCAATAAGCAAATCTCAAAGAAGAAAAATAGCGGCACCAAGAGACCCCTAACTGCCGCAGTCGCAGGTGCAGTTTTTGCTGTCGTTTTACTCTCCTTTATGGTGGTTTTCTTCATCAAAAACCTCAAGCAAAACGTTGCCGTTTACAAAAACCAAAAAGATGGAACTTCTCGCGGAGGTGGCTCTGGCTCATCATCGCTACCAACCAACCTCTGCCGTCACTTCTCAATCGCAGAAATCAGGGCCGCCACAAACAACTTCGACCAACTCTTCGTCGTTGGAGCGGGAGGCTTCGGCGACGTGTACAAAGGCTACATTGACGACGGCTCAACACCTGTCGCTATCAAAAGGCTCAAACCCGGTTCTCAGCAAGGTCTGAACGAGTTCATGAACGAGATCCAAATGCTCTCTCAACTTCGTCACCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGATACTCATTTACGATTTCATGGAACGCGGAACCCTCCGTGACCATCTCTACGGAACCGATAGCCCTCCGCTCTCATGGACTCAAAGGCTTCAGATATGCATAGGGGCCGCACGAGGACTGCATTATCTGCATACAGGTGCAAAACAGATGATCATTCACCGTGACGTGAAGAGCACAAACATCTTGTTGGATGAAAAATGGGTGGCGAAGGTTTCAGACTTCGGGTTATCTCGAATTGGGCCCACGGGTTCTTCAATGACCCATGTGAGCACAAAGGTGAAAGGCAGTGTTGGGTATTTGGATCCGGAGTATTACAAACGACAGCGTTTGACGGAGAAGTCGGACGTGTACTCATATGGGGTGGTGCTCTTGGAGGTATTGTGCGGGAGGCAGCCTTTGCTCCGAACGGCGGAGAAGCAACAGGTGTCACTTGTGAATTGGGCGAAGCATCGGTATGAGAAGGGGTTTCTGAGTGAGATTGTGGATCCAGCACTGAAGGGCCAGATAGCACCTCACTGTTTGCGCAAATTTAGTGAGGTTGCGTTGAGCTGTTTACTTGAGGATGGGAATCAGCGACCTTCCATGAACGTCGTGGTTGGAGTGTTGGAGTTTGTTATGCAACTTCAGCTTCAGGATGGTGCTAATGTCAATGTCGTGTTGGAAAGTGGTGGGGATTATGAAGACAGTACTACTGAGGACATGTTTAGCGGTAGCCATAGTAGTATGCATGTTTCGGACTTCAGTAATAGCAGTGGATTGAACTCTACAAGCTACGCGAGTCAGGAATCTGACAGGTTGATCTCAGAGCTTGTTTTCTCTGAGATTAATCATCCAAAGGGACGCTAA 2610 0.4678 MGTTYRPIALRNMLFFLLSLCHPYFSIADVIYRPVELFTVNCGSAINFTLDGRNWTGDSNTKFLSESKDSVTVQADTQSTIQGPYTYARLSHFQFTYSFPVTTQGPFFLRLFFYSTSYQMFDRHKANFSVQAGPYTLLQHFNPSLYAEADDDPTHSDILFREYCIYLQHDQRLDITFAPSTTESYAFINGIEIVSMPSYLYYSNPNYTVPDDITKLPQFVGHNQVYIITNNSALETKHRLKVGGAQISPSQDTGMLRTWDTDDKYLITDSGPSTDYAKKTNLSFVQIPNYTAPDQVYRSVRNIGMNPFKNLTWQLPVYSGFFYLLRLHFCQLNPEVQDPGDQMFYIFIQDQLAERGADILKWSDNQKGVPVVKDYAVYIPGNREKVYLSLEMHPNSMSSIQDAQLNAIEVFKINDTTGSLAEPNPDPPPQTTNKQISKKKNSGTKRPLTAAVAGAVFAVVLLSFMVVFFIKNLKQNVAVYKNQKDGTSRGGGSGSSSLPTNLCRHFSIAEIRAATNNFDQLFVVGAGGFGDVYKGYIDDGSTPVAIKRLKPGSQQGLNEFMNEIQMLSQLRHLHLVSLIGYCYESNEMILIYDFMERGTLRDHLYGTDSPPLSWTQRLQICIGAARGLHYLHTGAKQMIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGSSMTHVSTKVKGSVGYLDPEYYKRQRLTEKSDVYSYGVVLLEVLCGRQPLLRTAEKQQVSLVNWAKHRYEKGFLSEIVDPALKGQIAPHCLRKFSEVALSCLLEDGNQRPSMNVVVGVLEFVMQLQLQDGANVNVVLESGGDYEDSTTEDMFSGSHSSMHVSDFSNSSGLNSTSYASQESDRLISELVFSEINHPKGR* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1123 869 CDD STKc_IRAK 524 791 - -
Vra4g1123 869 Gene3D - 233 415 - -
Vra4g1123 869 Gene3D - 36 197 - -
Vra4g1123 869 MobiDBLite consensus disorder prediction 417 443 - -
Vra4g1123 869 SMART serkin_6 518 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1123 869 PANTHER OS07G0166700 PROTEIN 30 840 IPR045272 GO:0004714|GO:0006468
Vra4g1123 869 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 30 840 - -
Vra4g1123 869 Pfam Protein tyrosine and serine/threonine kinase 524 787 IPR001245 GO:0004672|GO:0006468
Vra4g1123 869 ProSitePatterns Protein kinases ATP-binding region signature. 524 547 IPR017441 GO:0005524
Vra4g1123 869 Pfam Malectin-like domain 40 413 IPR024788 -
Vra4g1123 869 ProSiteProfiles Protein kinase domain profile. 518 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1123 869 Gene3D Transferase(Phosphotransferase) domain 1 595 808 - -
Vra4g1123 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Vra4g1123 869 Gene3D Phosphorylase Kinase; domain 1 503 594 - -
Vra4g1123 869 SUPERFAMILY Protein kinase-like (PK-like) 494 793 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1123 Vra-Chr4 18366132 18368895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1123 27 869 Receptor kinase-like Gene Family AT3G51550 45.444 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g1123 Malectin_like 6.1e-34 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1123 - - vun:114186088 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1123 4 18366132 18368895 Vra4g1123 4 18366132 18368895 ECH