Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1122 ATGTTCGAGTTCACCTCTCTTTGTTACCGTTACTCTGATGACAGATTATCGATGGAGTCAAGTTGTACAAGAAGAGCTTTAAGAACCATCCTCTTCCTCCTCCTGTGGTGGTGCCTCTCTTTCATTTCCATGGCAGACGTTATTTATCGTCCCATTGACCTCTTTAGCATCAGCTGTGGCTCATCCAACAACTTCTCCACTCCCGACACTCGGAATTGGACTTCAGACAATCACTTCCTCTCTCCAACAAACCTCTCAGTCGCTGCTCCTTCACTCACACCATCTACCATACAGGGTCCCTACACCCATGCTCGTCTCTCTCACTCTCCATTCACTTACTCATTCCCTCTCACACCAGGCCCCAAGTTCGTTCGTCTTTTCTTCTACTCTACTTCATACCAAAACTTCCCTCGCTCCCTAGCCTCTTTCTCAGTCCAAGCAGGCCCCTACACCCTTCTGCAAGATTTCAATGCTTCACTCAACGCCGATGCCGATGATGACCCTAGCCACCCTGACATCTTGTTCAAAGAGTATTGCATCAACCTCCAAGATGGTAACAGGCTCAACATAACCTTCCTTCCTAGCACCACAGATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCCCTTATCTCTACTACACCGATCCTGACGACTCCACAGAGCAGCCGCAATTTGTTGGCACCATGACCACATATGTCGTTGAGAACAAGTTTGCTCTCGAGACCATGTACAGGTTAAAAGCTGGTGAACATACAATCTCCTCCTCTGAGGACACGGGTATGCTCAGGACTTGGGATTCCGATAGCAAGTACCTAGAGACAAAAAGTGAAGAATCTATTGAGTTTAAGAGTACAACTAATCTGAGCTTCACTAAGAAGACTCCTAACTACACGGCACCAGACCAATTATTCCGATCTGTAAGGAATATGGGAAGAGATGCCTCTATCAACATGAGGAACAACATCACTTGGCAACTTACCGTTGATTCCGGCTTCACCTACTTGCTAAGGTTATACTTTTGTGAGCTTAACCCGAGAGTTGACGAGGCTGGTGTTCTGAGATTCTTCATCTTCATACATGATCAGTTGGCTACCGATTGGGCAGATGTTTTCATGTGGACGAAACAGTGGGGTGTTCCCGTGGTTAAAGAGTATGTAGTTATCATCTCAGAGAATCCGAAAAAAGTTAACCTTTCGCTAAAAATGCATCCTCACCCTAAAAGCATTATCCAGGACGCACAAATAAATGCAATTGAAATCTTCAAAATCAGCAATTATAAAGGTAGTCTCGCCGGACCAAATCAGGACCCTCCTCTACAAACCGCAGTGGTATCCCGTCAAGGCTCAAACAATAAAAATGGAGCCTCCAAAAAAACCCTCGCCGCCGTGACAGGGACAGTTTTCGGTGTCCTTTTGCTCTCTTTTATTGTCGCTTTCTTTTTCGTCAAACGCAAGGAAAACATCTCCGTTGAAAGTAAGAAAGAGGGAAATTCTCGCCGGGATGGGTCATCACCACTACCAACCAACCTCTGCCGTCACTTCTCAATCTCAGAAATCATTGCCGCTACCAATAACTTCGACGAACTCTTCGTCGTTGGAGTGGGAGGCTTTGGCAACGTGTACAAAGGCTACATCGACGATTCAACACCTGTGGCAATCAAAAGGCTCAAACCGGGTTCTCAGCAAGGTCTGAACGAGTTCATGAACGAGATCCAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGATCCTCGTTTACGATTTCATGGATCGTGGAGCCCTCCGTGATCATCTCTACGACACCGATAACCCTTTGCTTTCATGGAAGCAAAGGCTTCAGATATGCATCGGGGCGGCACGAGGACTGCATTATCTGCATACAGGTGCGAAACAGATGATCATTCACCGTGACGTGAAGAGCACAAACATCTTGTTGGATGAAAAATGGGTGGCGAAAGTTTCAGACTTCGGATTGTCTCGAGTTGGGCCCACAGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAGGGCAGTGTTGGGTATTTAGATCCGGAGTATTACAGACGACAGCGTTTGACGGAGAAGTCGGACGTGTACTCGTACGGAGTGGTGCTCTTAGAGGTATTGTGTGGGAGGCAGCCTTTACTCCGAACGGTGGAGAAGCAACAGGTGTCCCTCGTGGATTGGGCGAAGCATCGGTATGAGAAGGGATCTGTGAGTGAGATTGTGGATCCAACACTGAAGGGTCAGATAGCACCTCTCTGTTTGCGCAAATTTAGTGAGGTTGCGATGAGCTGTTTACTTGAGGATGGGAGTCAGCGACCTTCCATGAACGACGTCGTTGGGGTGTTAGAGTTTGTTCTGCAGCTTCAGCTTCAGGAGGACAGTGCTCATGGTGATGTAGTGTGGGAGAGTGGCGGGGACTATGAAGGCAGTGCAACTGAGGACATGTTTAGCAGCTCCCATAGTAATAGCAATGTATTGAACACTACAAGCTTCGGGAATAAGGAATCTGATTGGTTAATCGCTGAGAATGTTTTTTCTGAGCTTAAGGATCCAAAGGGACGCTGA 2622 0.4722 MFEFTSLCYRYSDDRLSMESSCTRRALRTILFLLLWWCLSFISMADVIYRPIDLFSISCGSSNNFSTPDTRNWTSDNHFLSPTNLSVAAPSLTPSTIQGPYTHARLSHSPFTYSFPLTPGPKFVRLFFYSTSYQNFPRSLASFSVQAGPYTLLQDFNASLNADADDDPSHPDILFKEYCINLQDGNRLNITFLPSTTDSYAFINGIEIVSMPPYLYYTDPDDSTEQPQFVGTMTTYVVENKFALETMYRLKAGEHTISSSEDTGMLRTWDSDSKYLETKSEESIEFKSTTNLSFTKKTPNYTAPDQLFRSVRNMGRDASINMRNNITWQLTVDSGFTYLLRLYFCELNPRVDEAGVLRFFIFIHDQLATDWADVFMWTKQWGVPVVKEYVVIISENPKKVNLSLKMHPHPKSIIQDAQINAIEIFKISNYKGSLAGPNQDPPLQTAVVSRQGSNNKNGASKKTLAAVTGTVFGVLLLSFIVAFFFVKRKENISVESKKEGNSRRDGSSPLPTNLCRHFSISEIIAATNNFDELFVVGVGGFGNVYKGYIDDSTPVAIKRLKPGSQQGLNEFMNEIQMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGALRDHLYDTDNPLLSWKQRLQICIGAARGLHYLHTGAKQMIIHRDVKSTNILLDEKWVAKVSDFGLSRVGPTGSSMTHVSTQVKGSVGYLDPEYYRRQRLTEKSDVYSYGVVLLEVLCGRQPLLRTVEKQQVSLVDWAKHRYEKGSVSEIVDPTLKGQIAPLCLRKFSEVAMSCLLEDGSQRPSMNDVVGVLEFVLQLQLQEDSAHGDVVWESGGDYEGSATEDMFSSSHSNSNVLNTTSFGNKESDWLIAENVFSELKDPKGR* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1122 873 Pfam Protein tyrosine and serine/threonine kinase 536 799 IPR001245 GO:0004672|GO:0006468
Vra4g1122 873 Gene3D - 54 211 - -
Vra4g1122 873 Gene3D - 242 429 - -
Vra4g1122 873 SMART serkin_6 530 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1122 873 Gene3D Transferase(Phosphotransferase) domain 1 606 819 - -
Vra4g1122 873 CDD STKc_IRAK 545 802 - -
Vra4g1122 873 ProSiteProfiles Protein kinase domain profile. 530 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1122 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Vra4g1122 873 SUPERFAMILY Protein kinase-like (PK-like) 505 804 IPR011009 -
Vra4g1122 873 Gene3D Phosphorylase Kinase; domain 1 491 605 - -
Vra4g1122 873 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 47 849 - -
Vra4g1122 873 Pfam Malectin-like domain 57 427 IPR024788 -
Vra4g1122 873 PANTHER OS07G0166700 PROTEIN 47 849 IPR045272 GO:0004714|GO:0006468
Vra4g1122 873 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1122 Vra-Chr4 18359268 18362336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1122 40 873 Receptor kinase-like Gene Family AT3G51550 45.506 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g1122 Malectin_like 9.3e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1122 - - vun:114186088 1226.85