Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1121 ATGGACACAACCTGCAAACAAACTGCTTTAGTAACCATCCTCCTCCTCTTCCTGTTGTCGCGCCTCCCCTGCCTTTCCATGGCAGATGTTATCTATCGTCCTCTTGATCTCTTCACAATCAGCTGTGGCTCTTCTACCAACTTCTCCACGCTTGATACTCGGAATTGGACTGCAGACATCAATTTCCTCTCTCAAACCCATCATCCACTAGCTGTTCCTTCACTCACACCAATTAGCCGAGATAGTCCTTACGCCCATGCTCGTCTCTCTCTCTCCCCATTCACCTATTCATTCCCTGTCACCCCAGGTCCTAAGTTCCTTCGCCTTTTCTTCTACTCCACCTCGTACCCACCCTTCGATCGCTCCAAAGCCTGTTTCACAGTCCAAGCAGGCCCATATACCCTCCTTCAACACTTCAATGCTTCTCTTAATGCGGACGCCTTTGGCAACCCTGGCAACCCCGACATCTTGTCAAGAGAGTATTGCGTCACCCCCAAAGATGGTTGGCTTAACATAACCTTCAGCCCAAGCACCACAGCCCAGCATCCAGATTCCTACGCTTTCATCAATGGAATCGAGATTGTTTCAATGCCCTCTTATCTCTACTACACCAATCCTAACGTCGACATCGATGGATTGCCCATACCTGCTGACGCCGGCAACCCATTTCCCATTGATAACAGCTTTGCTCTGGAGACAATGTACAGATTGAGAGTAGGAGACAAAGATATGTCCCCCGCAGAGGACACGGGTATGCTCAGGACATGGGATGCCGATAAAAATTATGTAACCAGTCCAAGTGTACAATCTCTTGATCGTCGCCTTATAAGTAAGCTGAACTTCACTGAGAAGACTCCTAACTACACGGCACCAGACGAAGTGTACCGATCCTCAAGAAATATGGGGCCTGATGGCTCTGCCAACATGCGGTTCAACCTCACATGGCAGCTTCCGGTTGATTTGGATTTCACCTACTTGTTAAGGTTACACTTTTGCCAGCTCGACCCGGAGATTAATCGTCCTAGTGACTTCACCTTCTACATCTACATTCAGGATCGGTGGGTAGAAGTGTGGGCAAACGTCCTCAAATGGAGCGGTAAACAGAAGGGTGTCCCAGTGGTTAGAGAATACACAGTTTTCATGCCTCCCAATCAGGACAAAGCAAATCTTTCACTTAAAATGCATCCTAACCCTGAAAGCCATACCTTGGACGCACAAATAAACGCAATTGAGCTTTTCAAAATCAACGACTCATCCGGTAATCTCTCTGGACCAAATCCATCTCCTTTTCCAAAAATCTCCGATTCAAATAAAAAAAGCAGCGGCACCAAGAGACCCCTGGTTCCCGCTGTTGCCGGGGCAGTTTCTGCTGTCGTTTTACTCTCCTTTATAGTCGCTTTCTTCGTCGTCAAACACAAGCGTGGCGTTGCGATCAACAAGGGTTCCAACAAGAAGGACGGAACTTCTCGCGGGGGTGGCTCATCATCTCTACCAACCAACCTCTGCCGTCACTTCTCAGTCGCAGATATTAGGGCGGCCACAAACAACTTCGACGAACTACTAGTCGTTGGAGTGGGAGGCTTCGGCAACGTGTACAAAGGCTTCATCGACGACGGTTCAACCCCTGTTGCAATCAAAAGACTCAAACCGGGTTCTCAGCAAGGTCTGACCGAGTTCATGAACGAGATCGAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTTATCGGTTACTGCTACGAGAGCAACGAGATGATACTTGTTTACGATTTCATGGATCGTGGAACCCTCCGTGACCATCTCTACGGAACCGATAACCCTCCGCTCTCATGGAATCAAAGACTTCAAATATGCGTAGGTGCTGCACGAGGACTGCATTATCTGCACACGGGTGCGAAACAGATGATCATTCACCGCGACGTGAAGAGCACAAACATCTTGTTGGATGAAAAATGGGTAGCGAAGGTTTCAGACTTCGGGTTGTCTCGAATTGGGCCCACGGGTCCTTCAATGACCCACGTGAGCACTCAGGTGAAGGGCAGTGTAGGGTATTTAGACCCGGAGTATTACAAACGGCAGCGTTTGACGGAGAAGTCGGACGTGTACTCGTATGGGGTGGTGCTCTTAGAGGTATTGTGTGGGAGGCAACCTTTGCTCCGAATGGTGGAGAAGCAACAGGTGTCCCTTGTGGATTGGGCGAAGCATCGGTATCAAAAGGGATCTCTAGGTGAGATAGTGGATCCAGCACTGAAGGATCAGATAGCACCTCACTGTTTGCGTAAATTTGGTGAGGTTGCGTTGAGCTGTTTGCTTGAGGACGGGACTCAGCGACCTTCCATGAACGACGTAGTGGGGGTGTTGGAGTTTGTTCTGCAGCTTCAGCTTCAGGATAGTGCCCATTTCAATGCTGTGTTGGAAAGTGGTGGGGATTATGAAGACAGCGGTACTGAGAATATGTTTAGCAGTACACATAGTAGTGTGCATGTTTCGGACTATAGTAATAGCAGTGGACTGAACACTACAAGCTACAGGAGTAAGGAATCTGACAGCTTGATCCCAGAGCCTGTTTTCTCTGAGATTAAGGATCCAAAGGGACGCTGA 2607 0.4871 MDTTCKQTALVTILLLFLLSRLPCLSMADVIYRPLDLFTISCGSSTNFSTLDTRNWTADINFLSQTHHPLAVPSLTPISRDSPYAHARLSLSPFTYSFPVTPGPKFLRLFFYSTSYPPFDRSKACFTVQAGPYTLLQHFNASLNADAFGNPGNPDILSREYCVTPKDGWLNITFSPSTTAQHPDSYAFINGIEIVSMPSYLYYTNPNVDIDGLPIPADAGNPFPIDNSFALETMYRLRVGDKDMSPAEDTGMLRTWDADKNYVTSPSVQSLDRRLISKLNFTEKTPNYTAPDEVYRSSRNMGPDGSANMRFNLTWQLPVDLDFTYLLRLHFCQLDPEINRPSDFTFYIYIQDRWVEVWANVLKWSGKQKGVPVVREYTVFMPPNQDKANLSLKMHPNPESHTLDAQINAIELFKINDSSGNLSGPNPSPFPKISDSNKKSSGTKRPLVPAVAGAVSAVVLLSFIVAFFVVKHKRGVAINKGSNKKDGTSRGGGSSSLPTNLCRHFSVADIRAATNNFDELLVVGVGGFGNVYKGFIDDGSTPVAIKRLKPGSQQGLTEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGTLRDHLYGTDNPPLSWNQRLQICVGAARGLHYLHTGAKQMIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGPSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSYGVVLLEVLCGRQPLLRMVEKQQVSLVDWAKHRYQKGSLGEIVDPALKDQIAPHCLRKFGEVALSCLLEDGTQRPSMNDVVGVLEFVLQLQLQDSAHFNAVLESGGDYEDSGTENMFSSTHSSVHVSDYSNSSGLNTTSYRSKESDSLIPEPVFSEIKDPKGR* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1121 868 ProSitePatterns Protein kinases ATP-binding region signature. 523 546 IPR017441 GO:0005524
Vra4g1121 868 SMART serkin_6 517 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1121 868 Pfam Protein tyrosine and serine/threonine kinase 523 787 IPR001245 GO:0004672|GO:0006468
Vra4g1121 868 Pfam Malectin-like domain 40 415 IPR024788 -
Vra4g1121 868 MobiDBLite consensus disorder prediction 829 868 - -
Vra4g1121 868 CDD STKc_IRAK 532 790 - -
Vra4g1121 868 ProSiteProfiles Protein kinase domain profile. 517 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1121 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Vra4g1121 868 Gene3D Transferase(Phosphotransferase) domain 1 594 808 - -
Vra4g1121 868 MobiDBLite consensus disorder prediction 421 445 - -
Vra4g1121 868 Gene3D - 37 198 - -
Vra4g1121 868 Gene3D - 229 416 - -
Vra4g1121 868 MobiDBLite consensus disorder prediction 829 850 - -
Vra4g1121 868 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 30 840 - -
Vra4g1121 868 SUPERFAMILY Protein kinase-like (PK-like) 494 792 IPR011009 -
Vra4g1121 868 PANTHER OS07G0166700 PROTEIN 30 840 IPR045272 GO:0004714|GO:0006468
Vra4g1121 868 Gene3D Phosphorylase Kinase; domain 1 502 593 - -
Vra4g1121 868 MobiDBLite consensus disorder prediction 421 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1121 Vra-Chr4 18346098 18349077 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1121 19 868 Receptor kinase-like Gene Family AT3G51550 46.000 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g1121 Malectin_like 2.3e-34 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1121 - - vun:114186088 1474.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1121 4 18346098 18349077 Vra4g1121 4 18346098 18349077 ECH