Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1116 ATGTCGAGATTGAGCGCGCATCTGGTTTCTTGTGGTATTATGGGGATGTCGTTCGACCCCACGAGATTATCGATGGAAACAACATGTACGCGAACTGCTTCAAGAGCCACCCTCCTCCTCTTGCTTATGTGGTGCCTCTCTTTCCTTTCCACAGCAGACGATGTTTATCGTCCCACTGACCTCTTTAGCATCAGCTGTGGCTCATCCACCAACTTCTCCACTCTCGACTTTCGGAATTGGACTTCAGACATCCACTTCCTCTCTCCAACCCACCTCTCAGTTGCTGCTCCTTCACTCACACCATCTACCATACAAGGTCCCTACACCCATGCTCGTCTCTCTTACTCCTCATTCACCTACTCCTTCCCTGTCACACCAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCTACTTCATACCAAAACTTCCCTTGCCCCCTAGCCGCTTTCTCAGTCAAAGCAGGCCCCTTCACCCTCCTTCAAGATTTCAACGCTTCCCTCAACGCCGATGCTGATGATGACCCTAGCCACCCTGATATATTGTTCAGAGAGTATTGCGTCTACGTAGGAGACGGTGAGAAGCTGAATATAACCTTCTTTCCCAGCACCACATATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCCCTTATCTATACTACACCAATCCGGACGACTCCACAGAGCAGCCGCAATATGTTGGCACCACAACCCCATATGTCGTTGAGAACAAATTTGCTCTCGAGACCATGTACAGGTTAGTCGTTGGAAATGAAATTCCCCCCGCAGGGGACACTGGTATGCTCAGAACGTGGGTACCTGACATCAAGTACGTAAAAACTCAATATAATCAATCAGTTGATTATGGGAGTCATACAAAGCTCAAGTTCATTAAAACCTATAACTACACGGCACCAGATCAAGTGTACAGAACCGTTCGGAGTATGGGACTTGATGGCTCCATCAACATGGGTTTCAATCTCACATGGCTGCTTCCAGTTGATTCAGGCTTCTTCTACATGCTACGGTTACACTTTTGCCAGCTTGATCCGTGGGTTAACAACATTGGTGACCTGTTTTTCAACATCATCATAGCGGATCAGTTGGCTACCGATCGGGCAGACGTTCTCCTGTGGACTGATAATCAGAAGGGCGTACCAGTGGTTAAAGACTACGTAGTTTCCATACCAGGTAATCTCAACAAAACAAATCTATCAGTGAAACTGCATCCTCGCCCTACAAGCCGGATCAGAGACGCGGTTATCAACGCAATTGAAGTCTTCAAAATCAGCAGCTCAACAGATAGTCTCGCTGGACAAAATCCAAACTCTCCTCCTCAAAAGCCCAAGGTTCCTCTTAGCTCAAACAAGAAAAGTAGCGTCATCACGAAAAGCCGAGAAGGCATATTAGGAGCAGTTGCAGGTGTCCTTTTGCTCTCTTCTATTGTTGTTTTCTTCCTCATCAAATGCAAAAAGAATATCGCCCTTGAAAGTGGTTCCAGCAAAAAAGGAGGAACTTCTCGCGGGGGTGGCTCATCGTCACTGCCAACCAACCTCTGCCGCTACTTCTCCATAACAGAAATCAGAGCCGCCACTAATAACTTCGACGAACAAATGGTGGTTGGCATGGGAGGCTTCGGCAACGTCTACAAAGGATATGTAGATGAGGGTTCAGTACCCGTTGCAATCAAAAGGCTCAAACCCGGTTCTCAGCAAGGTATGCAGGAGTTCATGAATGAAATCGAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAACACCGAGATGATACTCATTTATGATTTCATGGAACGCGGAACCCTCCGGGACCATCTCTACGGTTCTGATAATCAGTCCTTGTCGTGGAAGCAAAGGGTCCAGATTTGCATAGGTGCTGCAGGAGGGCTCCACTATCTGCATACAGGTGCAAAGCACGTCATCATTCACCGTGATGTGAAGAGTACCAATATTTTATTGGATGAAAAATGGGTAGCCAAAGTTTCAGACTTCGGGTTATCCAGAATTGGGCCCACGAGTTCTTCAATGACCCATGTAAGCACCCAGGTGAAGGGCAGTGTTGGGTATTTAGACCCGGAGTATTATAAACGACAGCGTTTGTCGGAGAAATCTGACGTGTACTCGTTTGGGGTTGTGCTGTTGGAGGTATTATGTGGGAGGCCGCCTTTGCTCCGTATGGCGGAGAAGCAACAGGTGTCTCTCGTTGATTGGGCAAAACATAGATATAAGGAGGGGTGTTTGGGTGAGATTGTGGATCCAGCACTGAAGGGTCAGATAACACCTCAGTGTTTGCAAAAATTTGGAGAGGTGGCGTTGACCTGTTTGCTGGAGGATGGTACTCAAAGGCCTTCCATGAACGTCATCGTTGGAATGCTGGAGCTTGTTCTGCAGCTTCAGGAGGATAGTGCTAAAAATGTAGTGATGATGGACACTGGTGGAGGTTACGAAGAAGATAGTGAGGACATGTTTAGCGGTAGTCATTACAGTGTAGAACTTACAGATTATAGTAATAGCACTAGATGTAACACCTCAGGCAACACAGATGATAGCTATGGGAGTAAGCAATCTGACAGGTTGCTCTCTGAGAATGTTTTCTCTGAGATTTGGGATCCAAAGGGACGATAG 2679 0.4711 MSRLSAHLVSCGIMGMSFDPTRLSMETTCTRTASRATLLLLLMWCLSFLSTADDVYRPTDLFSISCGSSTNFSTLDFRNWTSDIHFLSPTHLSVAAPSLTPSTIQGPYTHARLSYSSFTYSFPVTPGPKFIRLFFYSTSYQNFPCPLAAFSVKAGPFTLLQDFNASLNADADDDPSHPDILFREYCVYVGDGEKLNITFFPSTTYSYAFINGIEIVSMPPYLYYTNPDDSTEQPQYVGTTTPYVVENKFALETMYRLVVGNEIPPAGDTGMLRTWVPDIKYVKTQYNQSVDYGSHTKLKFIKTYNYTAPDQVYRTVRSMGLDGSINMGFNLTWLLPVDSGFFYMLRLHFCQLDPWVNNIGDLFFNIIIADQLATDRADVLLWTDNQKGVPVVKDYVVSIPGNLNKTNLSVKLHPRPTSRIRDAVINAIEVFKISSSTDSLAGQNPNSPPQKPKVPLSSNKKSSVITKSREGILGAVAGVLLLSSIVVFFLIKCKKNIALESGSSKKGGTSRGGGSSSLPTNLCRYFSITEIRAATNNFDEQMVVGMGGFGNVYKGYVDEGSVPVAIKRLKPGSQQGMQEFMNEIEMLSQLRHLHLVSLIGYCYENTEMILIYDFMERGTLRDHLYGSDNQSLSWKQRVQICIGAAGGLHYLHTGAKHVIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTSSSMTHVSTQVKGSVGYLDPEYYKRQRLSEKSDVYSFGVVLLEVLCGRPPLLRMAEKQQVSLVDWAKHRYKEGCLGEIVDPALKGQITPQCLQKFGEVALTCLLEDGTQRPSMNVIVGMLELVLQLQEDSAKNVVMMDTGGGYEEDSEDMFSGSHYSVELTDYSNSTRCNTSGNTDDSYGSKQSDRLLSENVFSEIWDPKGR* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1116 892 SUPERFAMILY Protein kinase-like (PK-like) 515 812 IPR011009 -
Vra4g1116 892 MobiDBLite consensus disorder prediction 437 460 - -
Vra4g1116 892 MobiDBLite consensus disorder prediction 854 874 - -
Vra4g1116 892 Gene3D Phosphorylase Kinase; domain 1 523 614 - -
Vra4g1116 892 Pfam Protein tyrosine and serine/threonine kinase 543 808 IPR001245 GO:0004672|GO:0006468
Vra4g1116 892 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 54 858 - -
Vra4g1116 892 SMART serkin_6 538 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1116 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 659 671 IPR008271 GO:0004672|GO:0006468
Vra4g1116 892 ProSiteProfiles Protein kinase domain profile. 538 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1116 892 ProSitePatterns Protein kinases ATP-binding region signature. 544 567 IPR017441 GO:0005524
Vra4g1116 892 Gene3D - 249 435 - -
Vra4g1116 892 Gene3D - 60 218 - -
Vra4g1116 892 CDD STKc_IRAK 544 811 - -
Vra4g1116 892 PANTHER OS07G0166700 PROTEIN 54 858 IPR045272 GO:0004714|GO:0006468
Vra4g1116 892 Pfam Malectin-like domain 64 433 IPR024788 -
Vra4g1116 892 Gene3D Transferase(Phosphotransferase) domain 1 615 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1116 Vra-Chr4 18272409 18275811 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1116 47 892 Receptor kinase-like Gene Family AT3G51550 45.061 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g1116 Malectin_like 9.4e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1116 - - gmx:100814046 1172.15