Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1110 ATGGTACCATGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTAGCTACCAACAATGAGATACATAAGATCATGATTAAGAGCCCAAAAGAAGTGGATTTTGCTTTAAAACAGGAGGGTGGTCATTCTCAATCAATTAGTGATCCTGAAAAGGCAAAGGCTCCATCTAGCTCAGCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCTAGAGCCTTTGGAGGGAAAGACAGGCACAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGACGGGTACGATTATCAGTACCAACTGCTATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCAAGCAAGGTTGTTGATTGGTTGCTGAATGCTGCTAAGCATGAAATTGATGAACTTCCACCACTGCCAATTATTCCTTCAGTGAATAACTTCACCCTTGGTTATCCATCTGCTGTTACTTCTAATGAAGCTACAAACTCTCACTCTCACTCTCAGCCTAATGAACAACTTAATATAAACAACAGCATTCACTGGCAAGGTTCAGACCAAAATTCTTCATGGAAATTAAAGCGTAAAGAAGTTTCAGGAGAAATGATCAGCACTGACAAGGCAAGTTGGATAAATAGAAGTGAAGAGGATAAGCAAGGAAGCAATAATGAAGTGCCCAGCACACACGTTATGCCAAATAATCTCTTACCAAGGGTAAACCATCCTTCATTCCTGGGCCTGCTAAATACTATGCCACAAGGTTATCAGTGGGAAGCTTCCGCTAGTGATGTTTCTCATCCTCAGTTGGAAAACAATGGATTTTCAAACCAAACAGACATACACAACATTAACGTTGTACCTTTCCCAACATCAACATTGTCTTTATCAAGAGGGAATTCTCAAATTCTGCTATGTCCTCCAGGAGCGGCACAGTCATATTTCCCTTCACATTTTACAGCAATGGACATGGATCAGAGGCAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTCAAAACCCATTGGCGAATTCTCTCAATCATTCTTTTAGCTTGGCTATGATGTCTCATAAACCCCTCCATTCACCCAACAGCAGCAAAAGCCCATCCCACAAAGACCAAGATTTCCCTTCCAAGTGA 1158 0.4171 MVPWNRILTSIKWKDKTLHLATNNEIHKIMIKSPKEVDFALKQEGGHSQSISDPEKAKAPSSSAAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSVNNFTLGYPSAVTSNEATNSHSHSQPNEQLNINNSIHWQGSDQNSSWKLKRKEVSGEMISTDKASWINRSEEDKQGSNNEVPSTHVMPNNLLPRVNHPSFLGLLNTMPQGYQWEASASDVSHPQLENNGFSNQTDIHNINVVPFPTSTLSLSRGNSQILLCPPGAAQSYFPSHFTAMDMDQRQINHYQMLSSGSQNPLANSLNHSFSLAMMSHKPLHSPNSSKSPSHKDQDFPSK* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1110 385 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 30 381 - -
Vra4g1110 385 ProSiteProfiles TCP domain profile. 84 142 IPR017887 -
Vra4g1110 385 MobiDBLite consensus disorder prediction 45 59 - -
Vra4g1110 385 MobiDBLite consensus disorder prediction 362 385 - -
Vra4g1110 385 MobiDBLite consensus disorder prediction 44 67 - -
Vra4g1110 385 Pfam TCP family transcription factor 84 211 IPR017887 -
Vra4g1110 385 MobiDBLite consensus disorder prediction 362 377 - -
Vra4g1110 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 381 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1110 Vra-Chr4 18203620 18205725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1110 67 339 TCP Transcription Factor Family AT3G02150 42.807 2.10e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra4g1110 TCP 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1110 - - var:108327895 717.613