Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1108 ATGGTTTTTATAACAGTACAGCGGATTGATAGTCACTTGATTAGAGCTGTCTGGTTTTCCCGTATTTGGTCTTTTGGTAGAACGAAGCAGCAAAAAGCCATGAAAGTGGTAGAAGTTTTGAGCATAGCACCAAGCTCTGAATCGAAAGAGTTACCGACAGAGGCATCTTTCGCCCTCACCTTCTTCGACATATTATGGCTAAGGTTACCCCCTGTTCAACGTGTCTTCTTCTATGAATTTCATCATCCAACTGATGTTTTTTTTGATACCCTTCTTCCCAAACTCAAACGCTCTCTCTCTCTTGCACTTGGCCACTTTTTCCCTCTTGCTGGACACCTCACTTGGCCCACTCACTCCATCAAACCCCTCATCGTTTACAATCAAGGTGATACTCTTTCACTCACTGTAGCCGAATCTGACGCCGATTTCAACCATCTTGCAGGCACAGATTTCACTGAAGCTACAGAAACTCATCCTTTTGTACCTCCCTTGAACATATCCCACGAACAAACTACTCTTTTTGCCCTGCAAGTTACTCTCTTTCCAAACGCTGGATTTGCCATTGGAATAACCTCCCACCATGCTGTTCTTGATGGCAAAGCTTCAACAACGTTTGTCAAATCGTGGGCATATCTCGGCAGAGAAGCACAACCACCCTTTTCTTTGCCAGCTGAATGGACTCCTTTCTTTGATAGGGAAATAGTTCAAGACCCCACAAAAATAGGAGAAAAGTATTCCCTTGGCTGGTTAAATATGGGTGGTCCCAACAACAGAAGCCTCAAGGTTAGCGAGATGCCTGTTCCAGAAGAAGCAACCAGAGGCTTGTTTCATTTGTCTAGCTCAGGTATTGAAAAGCTGAAGCAGATTGTGCAGAGTAAAGAGAATAACACCAACCTTCACTTGTCAACTTTTGTGCTAGCTGCCGCCTATTCGATGGTATGCAGAGTGAAAGCAGAAGGTGGCCAAAGTACAAGTACTGGTTTCGGTCTGAATGTTGATTGCAGGCGTCAGCTGGAGCCTCCTGTTCCTCCAACATATTTAGGGAACTGTGTTGGTATCACTGTTGCAATTACTGAAACAAAAGACTTGTTGGGGGAGGATGGACTTATTGTGGCTGTGAAAGCACTGAGTGAAGCTTTGGGAACATTGAAGAAGGAAGGTTTTCTGCATGAAGCAGAATACTGGTGGAAGATGGTGTATGAAAGTTACAAAGTTGGTGACACAAAGACAGCTGCTTTTGCAGGGTCACCGAGGTTTGATATTTACAGTAGTGATTTTGGTTGGGGAAAACCAAAGAAGGTGGAGATGGTGTCTATTGACAGAACTGCAGCGTTTTGTTTTTCAGATAGCAGAACAGGTGACGGAATTGAAATTGGTTTCGTGACCAAGAAAAAAGCTATGGAAACCTTTGCTTCTCTCTTTGAAGATGGCCTTCAATCTTGA 1443 0.4387 MVFITVQRIDSHLIRAVWFSRIWSFGRTKQQKAMKVVEVLSIAPSSESKELPTEASFALTFFDILWLRLPPVQRVFFYEFHHPTDVFFDTLLPKLKRSLSLALGHFFPLAGHLTWPTHSIKPLIVYNQGDTLSLTVAESDADFNHLAGTDFTEATETHPFVPPLNISHEQTTLFALQVTLFPNAGFAIGITSHHAVLDGKASTTFVKSWAYLGREAQPPFSLPAEWTPFFDREIVQDPTKIGEKYSLGWLNMGGPNNRSLKVSEMPVPEEATRGLFHLSSSGIEKLKQIVQSKENNTNLHLSTFVLAAAYSMVCRVKAEGGQSTSTGFGLNVDCRRQLEPPVPPTYLGNCVGITVAITETKDLLGEDGLIVAVKALSEALGTLKKEGFLHEAEYWWKMVYESYKVGDTKTAAFAGSPRFDIYSSDFGWGKPKKVEMVSIDRTAAFCFSDSRTGDGIEIGFVTKKKAMETFASLFEDGLQS* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1108 480 SUPERFAMILY CoA-dependent acyltransferases 275 480 - -
Vra4g1108 480 Gene3D - 33 259 IPR023213 -
Vra4g1108 480 PANTHER - 34 480 - -
Vra4g1108 480 Pfam Transferase family 42 475 - -
Vra4g1108 480 PANTHER ACYLTRANSFERASE, PUTATIVE-RELATED 34 480 - -
Vra4g1108 480 Gene3D - 267 480 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1108 Vra-Chr4 18190137 18191815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1108 80 475 Monolignol Biosynthesis Gene Families AT5G48930 24.221 3.24e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1108 - - gmx:100805184 616.305