Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1100 ATGGCTTCAAATAATGTCCTAAGTGAGATCTTTGAAGGTCAAGTTCACTTGTACAAACACTTATATGCTCATGCAGTAGATTGTATAAGTATTAAATGGATGATTGATCTTGGCATACCAGACATCATCCACAACCATGGTCAACCTATTTCACTTCCAAAGTTGGTGTCCATTCTACAAATTCCGCCAAGTAAAGTTAGAGGCGTGAAGAGTCTCCTACGCTACCTGGCACACAATGGATTCCTTCAGATTGTAAGACTCCATCACAACACAGAAGAAAACGAAGCATTTTCTCTAACACCTGCATCACAGCTTCTTGTCAAAGGCACTGACCTTTGTCTTGCACCAATGGTAGAGGCTTTTATTAACCCAAGTATGGCACACGTATGGTCTCACTTGAAGAAGTGGACTTATGAGGACGATCTTACACTGTATGATGTCTCCCTTGGATCAAATTTCTGGGACATTCTTAGTAAAAACCCAGCAATGAACGAATCGTTCAATGAGGCAATGGCTAGCGATTCTCAGATGATAAACCTGGCATTAAGAGGTTGCAAATGGGTGTTCGAAGGAGTGGAGACCATTGTGGATGTCGGAGGTGGAACCGGAAACACAGCCAAGGCTATCTGTCATGCATTTCCTAACGTGAAGTGCACTGTCTTTGATCGTCCACAGGTTGTGGAGAAGTTGTCGGGAACCAAGAATTTGACATATGTTGGCGGTGACATGTTCGAATCTATTCCCAAGGCTGATGCAGTTCTACTCAAGTGGATTTTGCATGATTGGAATGACGAGGATTGTAAGAAGATATTAGAAAATTGCAAAGAAGCTATTTCTGGTAAAGGAGAAAGAGGAAAAGTAATTGTGATAGAAGCTGTGATAAACGAAGGCCAAGATGAGCAGGGACTTACCGGAGTAAAGCTACTCATGGATGTGCAAATGACATGTCTTAATAATGGAAAAGAGAGAACTGAAGAAGAATGGAAGAAACTCGTGATGGAAGCAGGATTTCAGAGCTACAAAATATCTTCTTTCACAGGATGTTTGTCTCTTATTCAGATCTATCCTTGA 1071 0.4146 MASNNVLSEIFEGQVHLYKHLYAHAVDCISIKWMIDLGIPDIIHNHGQPISLPKLVSILQIPPSKVRGVKSLLRYLAHNGFLQIVRLHHNTEENEAFSLTPASQLLVKGTDLCLAPMVEAFINPSMAHVWSHLKKWTYEDDLTLYDVSLGSNFWDILSKNPAMNESFNEAMASDSQMINLALRGCKWVFEGVETIVDVGGGTGNTAKAICHAFPNVKCTVFDRPQVVEKLSGTKNLTYVGGDMFESIPKADAVLLKWILHDWNDEDCKKILENCKEAISGKGERGKVIVIEAVINEGQDEQGLTGVKLLMDVQMTCLNNGKERTEEEWKKLVMEAGFQSYKISSFTGCLSLIQIYP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1100 356 Pfam O-methyltransferase domain 130 338 IPR001077 GO:0008171
Vra4g1100 356 Gene3D Vaccinia Virus protein VP39 107 356 IPR029063 -
Vra4g1100 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 352 IPR029063 -
Vra4g1100 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 356 IPR016461 GO:0008168
Vra4g1100 356 CDD AdoMet_MTases 194 294 - -
Vra4g1100 356 Gene3D - 2 106 IPR036388 -
Vra4g1100 356 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 6 355 - -
Vra4g1100 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Vra4g1100 356 PANTHER O-METHYLTRANSFERASE 6 355 IPR016461 GO:0008168
Vra4g1100 356 SUPERFAMILY "Winged helix" DNA-binding domain 8 110 IPR036390 -
Vra4g1100 356 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1100 Vra-Chr4 18115213 18116421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1100 20 354 Monolignol Biosynthesis Gene Families AT5G54160 30.678 4.66e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1100 K22588 K13262 gmx:100811609 506.138