Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1097 ATGGCTTCAAATAATGTCCTAAAAGCGAGTGAGATCTTTGAAGGTCAAGTTCACTTGTACAAACACTTGTATGCTCATGCAGTAGATTGTATGAGTATTAAATGGATGATTGAGCTTGGCATACCAGACATCATCCACAACCATGGTCAACCCATTTCACTTCCAAAGTTGGTGTCCATTCTACAAATTCCACCAAGTAAAGTTAGAGGCGTGAAGAGTCTCCTACGCTACCTGGCACACAATGGATTCCTTCGGATTGTAAGAGTCCATCACAGCACAGAAGAAAACGAAGCATTTACTCTAACACCTGCATCACACCTTCTTGTCAAAGGCACTGACTTTTGTCTTGCACCAATGGTAAAGGGTATAACTAACCCAACTTTATCAGATATATGGTCTCACTTGAGGAAGTGGACTTATGAGGATGATCTTACACTGTATGATGTCTCCCTTGGATCAAATTTCTGGGACATTCTTAGTAAAAACCCAGCAATGAACGAGTCGTTCAATGAGGCAATGGCTAGTGATTCTCAGATGATGAATCTGGCATTAAGAGGTTGCAAATGGGTGTTCGAAGGAGTGGAGACCATTGTGGATGTCGGAGGTGGAACCGGAAACACAGCCAAGGCTATCTGTCATGCATTTCCTAACGTGAAGTGCACTGTCTTTGATCGTCCACATGTTGTGGAGAAGTTATCGGGAACCAAGAATTTGACATATGTTGGCGGTGACATGTTCGAATCTATTCCCAAGGCTGATGCAGTTCTACTCAAGTGGATTTTGCATGATTGGAANGACGAGGAGTGTAAGAAGATATTANAAAATTGCAAAGAAGCTATTTCTGGTAAAGGAGAAAGAGGAAAAGTAATTGTGATAGAAGCTGTGATAAACGAAGGGCAAGATGAGCAGGGACTTACTGGACTAAAGCTGGCCTNGGATGTGAAAATCACATGTCTTCTTAATGGAAAAGAAAGAAGAGAAGAAGAATGGAAGAAACTGTTCATGGAAGCAGGGTTCCAAAGCTACAAAATATCTCCTTTCACAGGATGTTTGTCTCTTATTCAGATCTATCCTTGA 1077 0.4141 MASNNVLKASEIFEGQVHLYKHLYAHAVDCMSIKWMIELGIPDIIHNHGQPISLPKLVSILQIPPSKVRGVKSLLRYLAHNGFLRIVRVHHSTEENEAFTLTPASHLLVKGTDFCLAPMVKGITNPTLSDIWSHLRKWTYEDDLTLYDVSLGSNFWDILSKNPAMNESFNEAMASDSQMMNLALRGCKWVFEGVETIVDVGGGTGNTAKAICHAFPNVKCTVFDRPHVVEKLSGTKNLTYVGGDMFESIPKADAVLLKWILHDWXDEECKKILXNCKEAISGKGERGKVIVIEAVINEGQDEQGLTGLKLAXDVKITCLLNGKERREEEWKKLFMEAGFQSYKISPFTGCLSLIQIYP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1097 358 PANTHER O-METHYLTRANSFERASE 2 357 IPR016461 GO:0008168
Vra4g1097 358 Gene3D - 2 108 IPR036388 -
Vra4g1097 358 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Vra4g1097 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vra4g1097 358 Pfam O-methyltransferase domain 132 340 IPR001077 GO:0008171
Vra4g1097 358 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
Vra4g1097 358 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Vra4g1097 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 358 IPR016461 GO:0008168
Vra4g1097 358 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 357 - -
Vra4g1097 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 354 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1097 Vra-Chr4 18066284 18090739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1097 22 344 Monolignol Biosynthesis Gene Families AT5G54160 31.420 3.43e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1097 K22588 K13262 gmx:100811609 507.294