Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1090 ATGGGGAAAAAACAGATCTTTTCTCATGTCTTCATTTGGGTTGTAATGATCTTGGTTGGAGCCTCTTGTGCTAACAAAGCAGGAGAAGAAGAAGATAGGATTTTGGCACTCCCTGGCCAGCCTAAGGTGTCATTTCAGCAATTTTCTGGCTATGTTACTGTCAACAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTGCACAAAATCCTCTCAGCAAACCTTTGGTCATTTGGCTCAATGGAGGTCCAGGATGTTCATCAGTGGCATACGGAGCATCTGAAGAGATTGGACCGTTTAGAATAAACAAAACAGCTTCTGGGCTATACATTAACAAGTTTTCATGGAACACTGTGGCCAACCTCTTGTTCTTGGAAGCTCCGGCCGGCGTCGGCTTTTCCTACACCAACCGTTCCTCAGACCTCCTTGACACCGGCGACCACCGCACTGCTCAAGACTCTCTGGAATTTGTTCTCCAATGGCTGGAACGCTTCCCCCGTTACAAACACCGGGAACTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAATTAGCTAAGGAAATAATTAACTATAACGCAAAAAGCAAGCACCCCATCAATCTGAAAGGCATAATGGTGGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGGACAGTGACATATTGGTGGAGCCATGCTATGATCTCGGACCAGACTTACCGGCAATTGATGAGTACATGTGATTTTCACCGGCAGAAGGAATCTGATGAGTGTGAGTCAGTGTATAGCTATGCCATGGATCAAGAATTCGGTAACATTGATCAGTACAACATCTATGCTCCTCCATGCAACAACTCTGATGGTAGTACCTCTCCCACCCGCCACACCATGCGCTTACCTCACCGACCCCATAAGGCTTTAAGGCATTGGTCTGGCTATGATCCATGTACAGAAAAGTATGCAGAGATTTACTACAACAGGCCTGATGTTCAGAAAGCCCTCCACGCTAACACAACTAGAATCCCATATAAGTGGACTGCTTGCAGTGAGGTTTTGAATCGGAACTGGAATGATACAGATGTATCTGTTCTTCCCATTTACAGAGAGTTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGTGGGGACGTAGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCACAGCTTAAGTTGTCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAGGTGTACGAAGGATTAACATTTGCAACAGTGAGAGGAGCAGGGCATGAAGTGCCTCTATTCAAGCCAAGAGCAGCCCTTCAGTTATTCACATCATTCCTTGCAGGAAAGCCTCTTCCCAAGTCCTAA 1395 0.4581 MGKKQIFSHVFIWVVMILVGASCANKAGEEEDRILALPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEAAQNPLSKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLEAPAGVGFSYTNRSSDLLDTGDHRTAQDSLEFVLQWLERFPRYKHRELYITGESYAGHYVPQLAKEIINYNAKSKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSTSPTRHTMRLPHRPHKALRHWSGYDPCTEKYAEIYYNRPDVQKALHANTTRIPYKWTACSEVLNRNWNDTDVSVLPIYRELIAHGIRVWVFSGDVDSVVPVTATRYALAQLKLSTKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFTSFLAGKPLPKS* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1090 464 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vra4g1090 464 Pfam Serine carboxypeptidase 39 457 IPR001563 GO:0004185|GO:0006508
Vra4g1090 464 SUPERFAMILY alpha/beta-Hydrolases 37 462 IPR029058 -
Vra4g1090 464 Gene3D alpha/beta hydrolase 28 286 IPR029058 -
Vra4g1090 464 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 25 11 463 - -
Vra4g1090 464 ProSitePatterns Serine carboxypeptidases, histidine active site. 428 445 IPR033124 GO:0004185
Vra4g1090 464 Gene3D - 317 354 - -
Vra4g1090 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 11 463 IPR001563 GO:0004185|GO:0006508
Vra4g1090 464 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Vra4g1090 464 Gene3D - 364 458 - -
Vra4g1090 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Vra4g1090 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Vra4g1090 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Vra4g1090 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1090 Vra-Chr4 17992601 17998074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1090 322 461 Calmodulin-binding Proteins AT2G22960 31.206 5.98e-16 74.3