Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1089 ATGGCTGTAGAGGAGTCTGAGTCTGTGATTGGAGAGCTAGAAAGAGAGGAGAACTTGATTGCTGCAGTAAGGCATATTGTGAAGGCACTAGGGCCGAATAAGACCCTTACCAGTGATGCCAAGAAAATTCTGGCAGATCTTGGGACCAGATTGTCTTCCATGTCCGTACCTAGTGAGAAGGAGGAGGGTAAACAAGGCCAAGGAGGGCAGGGCCGCGATGATCATGATGGTGGTGCTGATGATGATGATGAGGAGGAGGAGGATGATGATGATGAGGGTCTTAATGCTATTGAAGAAAGACTTAATGTGATTCAGGAGAAAATTATGAGATGGGAGGAGGATCAGTCCATGATTTGGGATTTGGGAACTGAAGAAGCATCTGAGTATCTGAATGCTGCTAACGAGGCCCGCAGGTTGATTGAGAAGTTGGAAAGTTTGCATTTGAGGAAAGAGGATCAAGAGTACGAGTTTCTGCAGAGGGCTTATAGTGTTCTTCAAACTGCTATGGCACGCCTTGAAGAAGAATTCAGTAACTTGCTTATCCAGAACAGGCAACCTTTTGAGCCTGAATATGTCTCTTTTCGTTCCAGTGAGGAAGATGTTGTTGATGAGAACTCCATAATCTCTATAGGTGATGAATCAGTTGAGGAATCACTTCAAAGAGATAGTGTCAGCAGAGCGTCTGAGGAGCATATCATTGATTTGGTTCATCCAGCCGTGATCCCGGATCTCAGGTGTATTGCAAACTTACTTTTTGCTTCAAATTATTGCCAGGAATGTTCCAATGCTTATATCATTGTCCGGAGGGATGCCCTAGATGAGTGCCTCTTCATTCTTGAAATGGAAAGGCTCAGCATCGAGGACGTCCTGAAAATGGAATGGGGTACTCTGAATTCCAAAATCAAAAGATGGATTTGGGCTGTCAAAATCTTTGTTAGGGTGTATCTTGCAAGTGAGAGGTGGCTCAGTGACCAGATTTTTGGGGAGGGTGAGCCTGTCAGTCTATCTTGTTTTGTTGATGCATCTAAGGCTTCCATATTGCAACTTCTGAATTTCGGTGAAGCCATGTCCATTGGCCCTCACCAACCTGAGAAACTGTTCCGTGTTCTTGACATGTACGAGGTTCTGCAAGACCTTATGCCAGACATTGATGCTTTGTATACAGATGAGGTTGGTTCCTCGGTTAAAATTGAATGTCATGAAGTTCTGAAGAGACTGGGCGATTGTGTGAGGGCAACATTTTTTGAATTTGAAAATGCCATTGCAACAAATGCATCATCAACCCCTTTTGTTGGTGGTGGCATACATCCTTTAACCAAATATGTTATGAATTATCTCAGAACCCTTACAGACTACAGTGACATACTCAATCTACTTCTTAAGGACCAGGAAGAGGAAGAATCCATTTCGCTGTCACCTGACATGAGCCCTGGTACAGAAGAAGATAGCAAAAGTCAGGGGTCTCCACGTAGAGTTTCCTCAATGGCCCTTCGATTCCGATCACTCGCATCTATCTTGGAAAGCAACCTTGAGGAGAAGTCTAAGTTATACAAAGAAGTCTCCTTGCAGCACTTGTTCTTGATGAACAACCTGCATTATATGGCTGAAAAGGTCAAGGGGTCTGAACTCAGGCTGGTGTTTGGAGATGAATGGATTCGAAAGCGCAATTGGAAGTTTCAGCAGCATGCAATGAAATATGAGAGGGCTAGTTGGAGTTCTATTCTTCTCTTACTAAAGGATGAAGGGATTCTTGTTCCCGGTACAAATTCGGTCTCAAAAAGTCTTCTTAAAGAGAGGCTACGAAGCTTCTACCTTGGTTTTGAGGATGTTTACAGGATCCAGACAGCTTGGCTTATCCCAGATATTCAGCTTCGCGAAGATTTACGGATTTCTATATCACTCAAAGTAATCCAAGCTTATAGAACTTTTGTTGGAAGGCATAACAGTCACATAAGTGACAAAATCATTAAGTACAGTGCTGATGATTTAGAAAACTACCTTTTGGATTTCTTTGAAGGATCTCAAAAGTGGTTGCAAAATCCTCATAGAAGGTAG 2055 0.4307 MAVEESESVIGELEREENLIAAVRHIVKALGPNKTLTSDAKKILADLGTRLSSMSVPSEKEEGKQGQGGQGRDDHDGGADDDDEEEEDDDDEGLNAIEERLNVIQEKIMRWEEDQSMIWDLGTEEASEYLNAANEARRLIEKLESLHLRKEDQEYEFLQRAYSVLQTAMARLEEEFSNLLIQNRQPFEPEYVSFRSSEEDVVDENSIISIGDESVEESLQRDSVSRASEEHIIDLVHPAVIPDLRCIANLLFASNYCQECSNAYIIVRRDALDECLFILEMERLSIEDVLKMEWGTLNSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGEPVSLSCFVDASKASILQLLNFGEAMSIGPHQPEKLFRVLDMYEVLQDLMPDIDALYTDEVGSSVKIECHEVLKRLGDCVRATFFEFENAIATNASSTPFVGGGIHPLTKYVMNYLRTLTDYSDILNLLLKDQEEEESISLSPDMSPGTEEDSKSQGSPRRVSSMALRFRSLASILESNLEEKSKLYKEVSLQHLFLMNNLHYMAEKVKGSELRLVFGDEWIRKRNWKFQQHAMKYERASWSSILLLLKDEGILVPGTNSVSKSLLKERLRSFYLGFEDVYRIQTAWLIPDIQLREDLRISISLKVIQAYRTFVGRHNSHISDKIIKYSADDLENYLLDFFEGSQKWLQNPHRR* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1089 684 Gene3D Exocyst complex component Exo70 108 679 - -
Vra4g1089 684 MobiDBLite consensus disorder prediction 470 492 - -
Vra4g1089 684 MobiDBLite consensus disorder prediction 77 95 - -
Vra4g1089 684 Coils Coil 126 182 - -
Vra4g1089 684 Pfam Exo70 exocyst complex subunit 302 668 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vra4g1089 684 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 22 678 - -
Vra4g1089 684 MobiDBLite consensus disorder prediction 50 95 - -
Vra4g1089 684 Coils Coil 94 114 - -
Vra4g1089 684 PANTHER EXOCYST COMPLEX PROTEIN EXO70 22 678 IPR004140 GO:0000145|GO:0006887
Vra4g1089 684 MobiDBLite consensus disorder prediction 468 492 - -
Vra4g1089 684 SUPERFAMILY Cullin repeat-like 115 672 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1089 Vra-Chr4 17987129 17990027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1089 12 684 EXO70 exocyst subunit family AT3G29400 47.896 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1089 K07195 - gmx:100799102 1209.13