Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1088 ATGGCGTTCTTAAATAGAATTGGAAATCTACTAAAGAATTCTGGTGTCAAGCACATGAATCAAGATTTTTCTATGTCTAGCCCCTCACTTTTCCAAGCAATTAGATCAATGTCATCTGCAAAGCTTTTTGTCGGAGGTATTTCTTACAGCACTGATGATATGAGCCTGCGGGAGGCATTTGCTCGCTATGGAGAAGTTCTTGATGCCAAGGTTATTATGGATCGTGAAACTGGTAGGTCAAGAGGTTTTGCCTTCATAACCTTTGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGGAGAATTCGGGTGAATTATGCTACAGAAAGGGCACGCCCAGGGTTTGGTGGTGGTGGAGGTGGCTATGCTAGCGGTGGTGGGTATGGTGGTGGTGGTGGAGGTGGCTATGGTGGAGGTGGATATGGTGACAGCAGGGGTGGAAGCTATGGTGGTGATAGTTATGGAGGAAACAACAGCAGGGGTGGAAGCTATGGAGGTGGTGGTTATGGTGTTACAGGAAGCTACGGCGGTGGCAATGCTGAAACTAGTTACACTGGTAGTGCTGGTGCTAGTAATTACCAATTTGGTGGAAATTCTGGTGGAGATCTTGGCTCAGCTAGTGGTGAATTTGGAAGCAGCCAAAATGAAGGAACGGGTGCAGCAGACAATTATGAATTCAATGAGCCACTTGAAGACAATGTGAGGGGGAACAGTGATGAACCTGATGACTATGCTCAGACCCGCAGGAGTTGA 780 0.4718 MAFLNRIGNLLKNSGVKHMNQDFSMSSPSLFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVLDAKVIMDRETGRSRGFAFITFATSEDASSAIQALDGQDLHGRRIRVNYATERARPGFGGGGGGYASGGGYGGGGGGGYGGGGYGDSRGGSYGGDSYGGNNSRGGSYGGGGYGVTGSYGGGNAETSYTGSAGASNYQFGGNSGGDLGSASGEFGSSQNEGTGAADNYEFNEPLEDNVRGNSDEPDDYAQTRRS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1088 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vra4g1088 259 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 257 - -
Vra4g1088 259 Gene3D - 13 142 IPR012677 -
Vra4g1088 259 PRINTS Eggshell protein signature 36 52 - -
Vra4g1088 259 PRINTS Eggshell protein signature 123 138 - -
Vra4g1088 259 PRINTS Eggshell protein signature 150 160 - -
Vra4g1088 259 PRINTS Eggshell protein signature 175 193 - -
Vra4g1088 259 MobiDBLite consensus disorder prediction 209 230 - -
Vra4g1088 259 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 257 - -
Vra4g1088 259 MobiDBLite consensus disorder prediction 237 259 - -
Vra4g1088 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Vra4g1088 259 MobiDBLite consensus disorder prediction 209 259 - -
Vra4g1088 259 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vra4g1088 259 SUPERFAMILY RNA-binding domain, RBD 24 149 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1088 Vra-Chr4 17978959 17982088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1088 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 34.615 1.13e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1088 K12741 - gmx:100807155 310.842