Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1071 ATGGAGTACGGCAATTGGGCTGAATCGTTGCAAACCGAAACCCCACTTCTCTCTTTCCCCCAACCTTCCTCATCATCTTATGCTCATCCACCATCTCAGAATATCCATTATCCCTCTTATCCTCAAAACCCTAACCCCTCTTCCTCTCTTCCCCTCAAACCTCCTGGGGTTGATTCTCTTCCCCCGTCTAACCCTATTATGTATTCGAATCATGAATCTGTTCCCATTCCCAGTTTGATCTATACCCAGACCCATGTTGGGGCTGGTTCCGATTCTGGGTACTATGTAAACGAGAACTGGGCTGCCAGAGAGGCTGTTAGGCAATTTGGTTCTGACCCAACTGTCTATGCGCCTGGTATCTCTATACCATCCAATGGCTCAGAACAATCGGCTATATGGTGGGCAAATACTGCAGCTCAACAACATGTCAATGGAATACTGAATAAAAAGCAAAAAAAAGCTAAAACTAAGGTTGTGCAACCTGCATATTGTGAAGTTTGCAAGATAGAATGCACTGGCAAGGAAGTGCTGGACCAACATAAATTAGGAAAGAAGCACAAAAGGAACTTGGAAAAACTAAGAGAATCATTGAAACCAACCCAAGTTCAACCGTCTGGGTCATCTAATCCCGTAATAGGACCCCAATTACCAGACAACAAGAGCAAATCAACCAGTGGGAACAAGATTAAGAGAAAAAAAGCTGAAACCCTTGAAGACTTGGAGAAAAAGAAAAAGAAGGTTCTTGATGGTGGAGCAGCAGCTGAAGCAGTTAAGATCTGTGCTATATGTAACGTGGTGTGTAATAGTGAGACAGTCTATAATTTTCATCTTACTGGACAAAAGCATGCTGCTATGCTGAAGAAAGCATATGATCATACACAGTCCTATGCCAGTTGA 897 0.4314 MEYGNWAESLQTETPLLSFPQPSSSSYAHPPSQNIHYPSYPQNPNPSSSLPLKPPGVDSLPPSNPIMYSNHESVPIPSLIYTQTHVGAGSDSGYYVNENWAAREAVRQFGSDPTVYAPGISIPSNGSEQSAIWWANTAAQQHVNGILNKKQKKAKTKVVQPAYCEVCKIECTGKEVLDQHKLGKKHKRNLEKLRESLKPTQVQPSGSSNPVIGPQLPDNKSKSTSGNKIKRKKAETLEDLEKKKKKVLDGGAAAEAVKICAICNVVCNSETVYNFHLTGQKHAAMLKKAYDHTQSYAS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1071 298 Pfam Zinc-finger of C2H2 type 259 282 - -
Vra4g1071 298 Pfam Zinc-finger of C2H2 type 163 186 - -
Vra4g1071 298 Gene3D Classic Zinc Finger 223 289 - -
Vra4g1071 298 Gene3D Classic Zinc Finger 146 193 - -
Vra4g1071 298 MobiDBLite consensus disorder prediction 14 62 - -
Vra4g1071 298 MobiDBLite consensus disorder prediction 44 61 - -
Vra4g1071 298 PANTHER ZINC FINGER RNA-BINDING PROTEIN 22 293 - -
Vra4g1071 298 MobiDBLite consensus disorder prediction 194 235 - -
Vra4g1071 298 PANTHER - 22 293 - -
Vra4g1071 298 SUPERFAMILY beta-beta-alpha zinc fingers 257 289 IPR036236 -
Vra4g1071 298 MobiDBLite consensus disorder prediction 14 43 - -
Vra4g1071 298 MobiDBLite consensus disorder prediction 196 223 - -
Vra4g1071 298 SUPERFAMILY beta-beta-alpha zinc fingers 156 194 IPR036236 -
Vra4g1071 298 SMART ZnF_U1_5 159 193 IPR003604 GO:0003676|GO:0008270
Vra4g1071 298 SMART ZnF_U1_5 255 289 IPR003604 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1071 164 292 C2H2 Transcription Factor Family AT5G61190 30.282 1.32e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1071 - - gmx:100814580 403.29