Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1062 ATGCCCAACACCTTCTCCTCTCTCTTCTGGTGGATTGGTAAAAACTTGCGAAGAAGGAACACGGTTAGTAATGGAGAGAGTGGGAACAACGACAACGTTGTCGGTGCCGTTGTCGTCGATGATAATCCGTTTGGCAGCACGGTAGAGTGTTACGCTTGCACGCAGGTTGGCGTGCCGGCGTTTCACTCAACCAGCTGCGACAGTTTTAACCAGCCGCAATGGGAGGCTTCGGCCGGCTCTTCCCTCGTTCCGATTCAGAATCGGCCCAATAAGGCTCTCGGGTTTCGGGCCGCGTCGGGTTCGAATATTGGACCGTTTGGGCGGGTTTTGGATCCACGGAGCAAGCGCGTCCAAAAGTGGAACCGTGCGCTTCTGCTGGCGCGTGGTGTGGCGTTGGCGATTGACCCGCTGTTCTTCTACTCGCTTTCGATCGGGAGGGAGGGGTCACCGTGCCTGTACATGGACGGAGGGCTGGCGGCGATGGTGACGGTGGCGCGGACTTGCGTGGATGCGGTGCACCTCTTGCACGTGTGGCTGCAATTCAGGCTGGCGTACGTATCGCGCGAGTCGCTGGTAGTTGGGTGCGGGAAACTGGTGTGGGACGCGCGTGAGATTGCGTCGCATTACCTGCGATCGTTGAAGGGGTTCTGGTTCGACGCATTCGTAATCCTCCCAGTTCCCCAGGCTGTGTTTTGGTTGATAGTGCCAAAATTGATAAGAGAAGAGCGAATTAAAATCATTATGACCATAATGCTATTGATTTTTTTGTTCCAATTTCTCCCCAAGGTTTACCACAGCATCTGCATGATGAGAAGAATGCAAAAAGTCACGGGCTACATCTTTGGTACCATTTGGTGGGGCTTTGGTCTCAATCTCATAGCTTATTTTATTGCTTCCCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCAATTCAACGAGTTGCGTCATGCCTTCGGCAGCAGTGTCAGAAAACTAATGGATGCAACCTTTCTTTGTCGTGCTCAGAGGAGGTATGCTACCAGTCTTTGTCAAGCGCAATAGGAGATTCTTGTGGTGGAAATTCAACAGTAGTGTTAAAAAAGCCTTATTGCTTAGACGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCAAGCAACTCTTTGGCTGTAAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCCACAAGTAACTGGCTGGAAGTAATTTTCAGCATATGCATCGTACTCAGTGGACTATTGCTTTTCACATTATTGATTGGTAACATTCAGGTATTCTTACATGCTGTCATGGCAAAGAAGAGAAAGATGCAGCTTAGATGTCGAGATATGGAATGGTGGATGAGGAGGAGGCAGCTGCCATCACGATTAAGACAAAGAGTTCGCCATTTTGAACGTCAGAGATGGGCTGCGATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGGCTGAGGAGGGACATCAAGCGCCATCTTTGTCTCGACCTCATTAGAAAGGTTCCTTTGTTCCACAACTTGGATGAACTTATTCTTGACAACATCTGTGACAGGGTGAGGCCCTTGGTGTTCTCTAAAGATGAAAAGATAATCAGAGAAGGTGATCCTGTACCAAGGATGGTGTTCATCGTCCGAGGACGGATGAAACGCAGCCAAAGTCTGAGCAAAGGCATGGTAGCCTCAAGCATTCTTGAGCCAGGAGGGTTTTTGGGTGACGAGCTACTTTCATGGTGCCTTCGCCGGCCGTTTATAGATAGACTTCCGGCCTCCTCAGCCACATTTGTGTGTCTTGAATCAGTAGAAGCCTTTGGCCTAGATGCAGAGCACTTGAGGTACATCACTGATCACTTCAGGTACAAGTTTGCCAACGAGAGGCTGAAGAGAACAGCAAGATATTACTCATCCAATTGGAGAACCTGGGCTGCTGTCAATATTCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAGAGGTCCGGTGACGCCTGTAAGGGAGAGTGGAGGCACTGAGCGCAGGCTCTTGCAATATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGA 2133 0.4923 MPNTFSSLFWWIGKNLRRRNTVSNGESGNNDNVVGAVVVDDNPFGSTVECYACTQVGVPAFHSTSCDSFNQPQWEASAGSSLVPIQNRPNKALGFRAASGSNIGPFGRVLDPRSKRVQKWNRALLLARGVALAIDPLFFYSLSIGREGSPCLYMDGGLAAMVTVARTCVDAVHLLHVWLQFRLAYVSRESLVVGCGKLVWDAREIASHYLRSLKGFWFDAFVILPVPQAVFWLIVPKLIREERIKIIMTIMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCQKTNGCNLSLSCSEEVCYQSLSSAIGDSCGGNSTVVLKKPYCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRHLCLDLIRKVPLFHNLDELILDNICDRVRPLVFSKDEKIIREGDPVPRMVFIVRGRMKRSQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESVEAFGLDAEHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVRESGGTERRLLQYAAMFMSIRPHDHLE* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1062 710 Pfam Ion transport protein 120 441 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra4g1062 710 SMART cnmp_10 523 649 IPR000595 -
Vra4g1062 710 Gene3D - 151 446 - -
Vra4g1062 710 SUPERFAMILY cAMP-binding domain-like 450 637 IPR018490 -
Vra4g1062 710 SUPERFAMILY Voltage-gated potassium channels 111 444 - -
Vra4g1062 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 53 710 - -
Vra4g1062 710 CDD CAP_ED 523 633 IPR000595 -
Vra4g1062 710 Gene3D Helix hairpin bin 449 514 - -
Vra4g1062 710 Gene3D Jelly Rolls 521 639 IPR014710 -
Vra4g1062 710 ProSiteProfiles cAMP/cGMP binding motif profile. 523 633 IPR000595 -
Vra4g1062 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1062 Vra-Chr4 17767486 17773839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1062 11 710 Ion Channels AT5G15410 76.634 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1062 K05391 - gmx:100798823 1307.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1062 4 17767486 17773839 Vra4g1062 4 17767486 17773839 ECH