Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1059 ATGGAATTGTGTTTCTCAGAGAAGGACACTGAAACCACCCTCCGTGCCATGGTGCTGGGTTCCAACGTGGTGTTTCCCGCGGCTCTAAACGCTGCAATTGAGCTCAACGTGTTTGACATAATTGCGAAGGAAGGTTCAGCGGAGAGTGGTGGGTTCATGTCACCCCCTGAAATCGCTTCCAAGTTATTGATACCAAGACAACAACAACACCACCGTGATTTGGCCAATCGACTGGAGCGTTTGTTGCGATTGCTTGCTAGCTACTCTCTTCTCACTGTTTCTTCTCGCAGCGACGGAGATGGTGGCAGCGTGAGAGTTTATGGAGTTTCCGAATCGGGTAAATACTTCGTGCGTGATGAAAATGGTGATGGTTACCTCGCTTCTTTCACTTCGTTTCTGTGTCACCCTGCATTATCAGGGGTGTGGCTGAATTTTAAGGAAGTGGTTATTGATCCTGAGATTGACCTATTCAAGAAGGTTCATGGAATGTCCAAGTTCGAATACTTTGGGAAATATCCTGAAATAAACCACGTATTTAACACAGCAATGCATGACATTTGCACCACCCACATGAAAAAAATACTTGAAGTATACACAGGATACGAGGGCATATCAACTTTGGTTGATGTAGGAGGTGGAATTGGACAGTGTCTCAAAATAATCATCTCCAAATACCCTTCAATTAAGGGAATTAATTTTGACCTCCCACATGTAATTGAAAACTCATCACCCATTCCAGGGGTTGAGCATGTTGGGGGGAATATGTTTGAAGGTGTTCCACAGGGTGACGCAATTATGCTTAAGGCTATAACCCATAATTGGTCCGATGAAAAAGTCATAGAACTTTTGAGCAATTGTCACAAAGCTTTGCCACCAAAGGGAAAGGTCATTGTTGGGGATTTCATACTGCCAGAAGATCCAGAACCCACAAATGAACATAAAATGATTTCAATTCTTGATAACATCATGTTTATTACTCCTGGTGGAAGGGAAAGAACTGAGAAAGAATTTGATAGTCTGGGCAAGAGTTCTGGATTTTCTAGGTTTGAAGTTGTCTGTCGAGCTTTCTCTACAATGGCTGTGATGGAATTTTACAAATAA 1101 0.4278 MELCFSEKDTETTLRAMVLGSNVVFPAALNAAIELNVFDIIAKEGSAESGGFMSPPEIASKLLIPRQQQHHRDLANRLERLLRLLASYSLLTVSSRSDGDGGSVRVYGVSESGKYFVRDENGDGYLASFTSFLCHPALSGVWLNFKEVVIDPEIDLFKKVHGMSKFEYFGKYPEINHVFNTAMHDICTTHMKKILEVYTGYEGISTLVDVGGGIGQCLKIIISKYPSIKGINFDLPHVIENSSPIPGVEHVGGNMFEGVPQGDAIMLKAITHNWSDEKVIELLSNCHKALPPKGKVIVGDFILPEDPEPTNEHKMISILDNIMFITPGGRERTEKEFDSLGKSSGFSRFEVVCRAFSTMAVMEFYK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1059 366 CDD AdoMet_MTases 206 303 - -
Vra4g1059 366 Pfam Dimerisation domain 28 86 IPR012967 GO:0046983
Vra4g1059 366 Gene3D Vaccinia Virus protein VP39 176 355 IPR029063 -
Vra4g1059 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 363 IPR029063 -
Vra4g1059 366 PANTHER O-METHYLTRANSFERASE 7 366 IPR016461 GO:0008168
Vra4g1059 366 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 7 366 - -
Vra4g1059 366 PIRSF O-mtase 2 366 IPR016461 GO:0008168
Vra4g1059 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 366 IPR016461 GO:0008168
Vra4g1059 366 Gene3D - 24 194 IPR036388 -
Vra4g1059 366 SUPERFAMILY "Winged helix" DNA-binding domain 9 120 IPR036390 -
Vra4g1059 366 Pfam O-methyltransferase domain 142 347 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1059 Vra-Chr4 17755760 17757855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1059 9 356 Monolignol Biosynthesis Gene Families AT5G54160 48.424 1.24e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1059 - - gmx:100798295 595.504