LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra4g1054	ATGTCCACTCCCAACGCCGACTCCGGCACGGCGCCGCATCCGCGCCCCACCATCACACTTCCTCCTCGTCCCTCCGCGGAGGCCTTTTTCTCCGCCGCTGGCGGTGCTAGCCCCGGTCCCATGACCCTCGTCTCCAGCTTCTTCGGTTCTGATGCCGCCGCCGACTGCCGCTCCTTCTCCCAGCTTCTTGCTGGCGCCATGGCCTCCCCGATGGCCTTCTCTGCCACCGTGGCCGACAACTCCGGCAAGGACGATGATGGGCCCCACAAGGGCTTCAAGCAGAGCAGACCCATGAATTTGGTCATTGCTCGTTCCCCTGTCTTCACTGTTCCACCCGGGTTGAGCCCTTCTGGGTTTCTTAACTCCCCTGGCTTCTTTTCCCCTCAGAGCCCCTTTGGGATGTCTCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCGCAGTCTCATATGCACATGCAAGCTGATTACCAGATGCATCCAGTAACTGCCCCCACTGAACCACCTGTACAACAGCCATCTTTTGCTCTAAATGAAGCTTCAGAGCAGCAGATAGTTCCGTCTGTATCAGAAGCTAAAAATGCTCAACTGGAAACGTCGGATATCTCACAGGCTGATAAGAAATATCAGCTGGCTTCCCAGGCCATTGACAAGCCTGCAGATGATGGCTATAACTGGCGCAAGTATGGGCAGAAGCAGGTTAAAGGCAGCGAGTATCCAAGGAGCTACTACAAATGTACACATCTGAATTGCCTAGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGACACATAACTGAAATTATATATAAAGGTCAGCATAACCATGAAAAGCCTCAGGCAAATAGACGTGTCAAGGATAATAGTGATTCAAATGGAAGTGCAATTGTTCAGCCTAAGTCTGAGTCAAATTCACAAGGTTGGGTTGGACAACAAGTAAACAAGTTTAGTGAAAACATTCCTGATTGTTCAGTTCCTGAAAGTGACCAGATCTCCAACCAAGGGGCACCTAGGCAACTACTACCTGGGTCAAGTGGGCGCGAGGAAGTGGGTGATGTAGATAATAGGGAAGAGGCAGATGACATTGAACCAAACCCTAAGAGAAGGAATACTGATCTTGCGGTTTCTGAAGTACCTCTTTCTCAGAAGACTGTCACAGAACCCAAAATTATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGTTACAGGTGGAGAAAATATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCGAGGAGTTATTACAAATGCACAAGTGCAGGATGCAACGTGCGTAAGCATGTTGAGAGAGCTTCAACCGACCCCAAAGCTGTCATAACCACGTATGAGGGTAAGCATAATCATGATGTGCCTGCTGCTAGAAATAGCAGCCACAACACAGCTAATAGCAATTCAATGCCATTAAAACCGCACAATGTCGTACCGGAGAAGCACCCTTTGCTTAAAGACATGGATTTTGGAAGCAATGATCAAAGACCTGTACATTTGCGCTTAAAAGAAGAGCAAATCATAGTATAA	1557	0.4888	MSTPNADSGTAPHPRPTITLPPRPSAEAFFSAAGGASPGPMTLVSSFFGSDAAADCRSFSQLLAGAMASPMAFSATVADNSGKDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMHPVTAPTEPPVQQPSFALNEASEQQIVPSVSEAKNAQLETSDISQADKKYQLASQAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGSAIVQPKSESNSQGWVGQQVNKFSENIPDCSVPESDQISNQGAPRQLLPGSSGREEVGDVDNREEADDIEPNPKRRNTDLAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANSNSMPLKPHNVVPEKHPLLKDMDFGSNDQRPVHLRLKEEQIIV*	519

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra4g1054	518	Gene3D	WRKY domain	389	465	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vra4g1054	518	Gene3D	WRKY domain	208	283	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vra4g1054	518	PANTHER	WRKY PROTEIN	10	517	-	-
	Vra4g1054	518	ProSiteProfiles	WRKY domain profile.	218	282	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vra4g1054	518	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	10	517	IPR044810	GO:0003700
	Vra4g1054	518	MobiDBLite	consensus disorder prediction	466	482	-	-
	Vra4g1054	518	SMART	WRKY_cls	223	281	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vra4g1054	518	SMART	WRKY_cls	404	463	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vra4g1054	518	MobiDBLite	consensus disorder prediction	1	33	-	-
	Vra4g1054	518	MobiDBLite	consensus disorder prediction	460	483	-	-
	Vra4g1054	518	MobiDBLite	consensus disorder prediction	272	383	-	-
	Vra4g1054	518	Pfam	WRKY DNA -binding domain	405	461	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vra4g1054	518	Pfam	WRKY DNA -binding domain	224	280	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vra4g1054	518	MobiDBLite	consensus disorder prediction	289	343	-	-
	Vra4g1054	518	MobiDBLite	consensus disorder prediction	272	288	-	-
	Vra4g1054	518	SUPERFAMILY	WRKY DNA-binding domain	222	282	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vra4g1054	518	ProSiteProfiles	WRKY domain profile.	399	464	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vra4g1054	518	SUPERFAMILY	WRKY DNA-binding domain	396	464	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra4g1054	Vra-Chr4	17735861	17740903	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra4g1054	15	516	WRKY Transcription Factor Family	AT2G03340	52.542	1.46e-147	431

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vra4g1054		WRKY	1e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra4g1054	-		-	gmx:100796679	947.962

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra4g1054	4	17735861	17740903	Vra4g1054	4	17735861	17740903	ECH