Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1053 ATGGGTTGCGCGAGCTCGAGGCGGGCTCTTGCTGGAAGCGATTTCACGCCGCCGGGACTGCTATCGTTGCGATCGAGCTCGCGGAAAAGGTGCAATGGGAAGAGGCGAAACAGCGTCGTGGAGGCGCGTGAGATAGACGCGGGATTGGAGGAGGAGAAGGAGTGGAAGAAGGGGAGCTTGAGAGGTCCGGTGTCGTTGAGGTTGTCGTGTAGGTTTGTGGAGGCTGAGCAGAATGCCGCTGGGTGGCCACCTTGGCTTACCTCTGTTGCAGGGGAAGCTATTCAAGGGTGGGTCCCTCTCAAAACCGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCACTGTATTCCAAGCACGTGAAATTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTACGATTTGACAAACTTAAAGATGATAGCATTAGGTTCATGGCAAGAGAAATAGTGATTCTTCGCTCACTTGACCACCCAAACATCATGAAATTGGATGGTATAATTACTTCACAACAATCAAACAACATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTGGCTTCTCCTGATATAAAGTTCACTGAATCACAGATTAAGTGTTACATGAGACAGTTATTGAGTGGAATCGAGCATTGTCACCTTCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATACTAGTGAACAATAAAGGTGTTCTCAAGATAGCAGATTTTGGATTAGCAAATACCCTTAGTCCTAATAGCAAGCAACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAACTCTTAATGGGATCAACAAACTATGGTGTTTCGGTGGATCTATGGAGTGTTGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTGGAACAATTACACAGAATTTTCAAGCTTTGCGGTTCTCCACCTGAGGAATACTGGAAAAAGAGTAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAGCCTCTCTTCATGAGAGGTGTAAAGGTTTTCCTGTAACTGCTGTAAAACTACTTGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCACTCACGTCTGAGTATTTCAGCACCAAGCCATATGCCTGTGATCCATCACTCATGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAGAAATCGGGAAGAAGCGAGCAGGAAAAAGACTTTAGGTAAAGGGAGAGAGGCTGCAACTTCAAAAAGGAATAGACGAGTCCACAAAGTTTCCCATGACCATATAAATTTCAACAAACCAGCTTGGAAAGAGGAAATGCAGAATAGTTCTCAAAATATTGGCACAAGTGATGATGGTAGGGCACATGTTGCAAAAGTTAAAATAGGAGCTTTGCATAAAGAGCAACCAAAGGCTTCATGTGATGCAAAGTCTGAGGCTACCCAAGTGGTGGATGGTTGCAATGGAAACAGTTTATACTCTGGACCAGCACCAGTCTCAGCATCCAGTGGTTTTACATGGGCCAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATGGTTCAAGAAGCAAAATCAGTGCTCTGGATCCAATCTTTGTACAAGGCGCATGTGATTTAACAAAACATGAGATAGAAGTTTCAGAAAGGAAACATGGTTTCAACACAAGACATCAGGACAGGACTTCCAGCCATGTATTACCAATATACCAGGCTCCTCGCTTTCAACAAAAATCATTCGATTTAGCTGATAAATACAACTCAAATTATTTCATGGAATTTGATTTCACAGATAAATTGGATACTCTGTTAGATCAGAACCACAGAAAATATGGTGAGCCTGTGAAGTTATCAGCGGCAAAAATGATTTCATCAAATAAAAAGGACGAGTTGTTGCAGCGAAATGATATGCGTCGATCTCTTCGTATGTCAACATCGGGAAGAGGATTATTCATTCTATAA 2019 0.4339 MGCASSRRALAGSDFTPPGLLSLRSSSRKRCNGKRRNSVVEAREIDAGLEEEKEWKKGSLRGPVSLRLSCRFVEAEQNAAGWPPWLTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSTVFQAREIETGRMVALKKVRFDKLKDDSIRFMAREIVILRSLDHPNIMKLDGIITSQQSNNIYLVFEYMEHDLAGLVASPDIKFTESQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNKGVLKIADFGLANTLSPNSKQPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHRIFKLCGSPPEEYWKKSKLPLATMFKPQTNYEASLHERCKGFPVTAVKLLETLLSIDPSKRGTASSALTSEYFSTKPYACDPSLMPKYPPSKEMDARNREEASRKKTLGKGREAATSKRNRRVHKVSHDHINFNKPAWKEEMQNSSQNIGTSDDGRAHVAKVKIGALHKEQPKASCDAKSEATQVVDGCNGNSLYSGPAPVSASSGFTWAKRRKPEASSILSDGSRSKISALDPIFVQGACDLTKHEIEVSERKHGFNTRHQDRTSSHVLPIYQAPRFQQKSFDLADKYNSNYFMEFDFTDKLDTLLDQNHRKYGEPVKLSAAKMISSNKKDELLQRNDMRRSLRMSTSGRGLFIL* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1053 672 PANTHER CELL DIVISION PROTEIN KINASE 62 564 - -
Vra4g1053 672 Pfam Protein kinase domain 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1053 672 ProSiteProfiles Protein kinase domain profile. 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1053 672 SMART serkin_6 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1053 672 Gene3D Phosphorylase Kinase; domain 1 92 187 - -
Vra4g1053 672 CDD STKc_CDK9_like 105 389 - -
Vra4g1053 672 PANTHER CYCLIN-DEPENDENT KINASE 62 564 - -
Vra4g1053 672 SUPERFAMILY Protein kinase-like (PK-like) 99 395 IPR011009 -
Vra4g1053 672 MobiDBLite consensus disorder prediction 408 432 - -
Vra4g1053 672 MobiDBLite consensus disorder prediction 403 442 - -
Vra4g1053 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vra4g1053 672 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Vra4g1053 672 Gene3D Transferase(Phosphotransferase) domain 1 188 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1053 Vra-Chr4 17727144 17734125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1053 97 464 Core Cell Cycle Gene Families AT5G10270 43.377 4.36e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra4g1053 Pkinase 9.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1053 - - gmx:100781059 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1053 4 17727144 17734125 Vra4g1053 4 17727144 17734125 ECH
Vra4g1053 4 17727144 17734125 Vra1g1023 1 12170939 12178842 ECH