Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1050 ATGGATGGACAAGCTGGCCGAGGTGGCGCTGGCCTCGACATGTTTNTACCAAATTATAAATTGGGAAAAACTCTTGGGATTGGATCTTTTGGCAAGGTGAAAATTGCAGAACATGTATTGACTGGTCATAAGGTTGCAATCAAGATCCTAAATAGGCGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCATCTGACATATATGTTGTTATGGAGTATGTGAAGTCTGGAGAGCTCTTTGATTACATAGTAGAGAAGGGTAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAACAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGTAACATCATGCGTGATGGTCACTTTCTCAAAACCAGTTGTGGAAGCCCTAACTATGCAGCTCCTGAGGTTATCTCCGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGTGGGATATACACCCTTCCCAGTCATCTATCACCTAGTGCTAGGGATTTGATACCAGGGATGCTTGTGGTTGATCCTATGAGGAGAATGACCATACCTGAGATACGTCAACACCCATGGTTCCAAGCTCGTCTTCCACGTTATTTGGCTGTGCCCCCACCAGATACACTGCAACAGGCCAAAAAGATTGATGAGGAGATTCTTCAGGAAGTGGTGAAGATGGGATTTGACAGGAATCAATTGATTGAATCCCTTCGGAACAGGATACAAAATGAGGGTACTGTAGCATACTATTTGCTATTGGACAATCGATTCCGTGTTTCCAGTGGTTATCTTGGAGCTGAGTTTCAGGAGTCCATGGATTCCAGTTTTAACCAAATGCATTCCAGTGAAGTTGCTTCTTCAGTTGTTGGACAACGCTTTCCAGGCTATATGGATTATCCAGGAGTAGGATCGAGGCCACAATTCCCTGTTGAAAGGAAATGGGCCCTTGGACTTCAGTCTCGAGCCCATCCTCGAGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAGTTAAATGTTTGTTGGAAGAAAATTGGACACTACAACATGAAGTGCAGATGGGTTGCTGCCATTCCTGGTCATCACGATGGAATGGTTAACAATAATGTGCACAGTAACAACCATTACTTTGGAGATGATTCCAACATTATTGAGAACGATGCTGTTTCTACTGCAAACGTGGTCAAATTTGAAGTTCAGCTTTACAAAACTCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTGTGTGCTGCCTTCCTTGCACAGCTTCGCGTCCTCTAG 1548 0.4193 MDGQAGRGGAGLDMFXPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPSDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPSARDLIPGMLVVDPMRRMTIPEIRQHPWFQARLPRYLAVPPPDTLQQAKKIDEEILQEVVKMGFDRNQLIESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQESMDSSFNQMHSSEVASSVVGQRFPGYMDYPGVGSRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAAIPGHHDGMVNNNVHSNNHYFGDDSNIIENDAVSTANVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1050 515 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515
Vra4g1050 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vra4g1050 515 SUPERFAMILY Protein kinase-like (PK-like) 16 287 IPR011009 -
Vra4g1050 515 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1050 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Vra4g1050 515 PANTHER SERINE/THREONINE KINASE 8 514 - -
Vra4g1050 515 Pfam UBA/TS-N domain 293 329 IPR015940 -
Vra4g1050 515 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1050 515 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1050 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Vra4g1050 515 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Vra4g1050 515 Gene3D Kinase associated domain 1, KA1 395 513 - -
Vra4g1050 515 CDD STKc_AMPK_alpha 17 271 - -
Vra4g1050 515 CDD UBA_SnRK1_plant 293 333 - -
Vra4g1050 515 Gene3D Transferase(Phosphotransferase) domain 1 12 353 - -
Vra4g1050 515 SMART uba_6 294 331 IPR015940 -
Vra4g1050 515 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 514 - -
Vra4g1050 515 SUPERFAMILY KA1-like 328 514 IPR028375 -
Vra4g1050 515 CDD AMPKA_C 389 512 - -
Vra4g1050 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1050 Vra-Chr4 17700848 17712737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1050 19 271 CBL-interacting serine-threonine protein kinases AT4G24400 51.575 5.73e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vra4g1050 Pkinase 8.8e-81 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1050 K07198 - gmx:100796687 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1050 4 17700848 17712737 Vra4g1050 4 17700848 17712737 ECH