Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1049 ATGGCAAGGAAGAGAAAGGCTTCTGAAGAAGGTAAAGAGAGAAATTTATCTGATGAAACCATGGCATGGGATGAGGTGATGAAGGAAGCTGCTGCACTAGGAAGTGGCAGGAAATTGAGGAAGAGATTTGTTGGGGTGAGGCAAAGGCCTTCCGGAAGATGGGTGGCTGAGATAAAGGATACAATTCAGAAGATAAGAGTTTGGCTAGGAACCTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCATGTCTTCTTCGAGGTGCAAATACTAGAACAAACTTCTGGCCCGGTTATCAATCTTCCTCTACTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTCAAAGCAAGGAATGACACTAGAACAAAGCCTTGCACTGTTTCTTCATCTTCCTCCTCCACATCTCTTATAATCAACCAGCAACAAAGCCAACAAGAAGATGTACATGGAAATGAGTCAACATATTTCACATTGGACCAATTCTCCGATTTCCTTAATGACCCTGAAGATTACAGCACAAACAACAATGAGTTTAGTAATGACAGTGCACAAATTGATTGCATCACAAATAGTCTTGAATCATGTTTGAATGAGAATGATGATTGCAGGGAAAACGAAAAAGAAATGGAAATGGAATTTGACTTCAACAGTGTGACACAAACATCAAGTGCTGATGTAAATTCAGGAGGGGAAAGAGAGGAAGACAGTGAAGAAGGAACTGATTTGAGTGCTCAGGATTTTCAGTTCCTAGACAATGTTGTTCCATCCAGTTATCATTATTCACTTTTTGAGATCACTGAAGAGATTGAGGAGCAGCTGGAGGCTGAAAACTGTGGTGATGAGCCTCCAATGTTTAGAGAAGTCTTGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAAGTTGAATCAGGAAACAAACATAGAAGTGAGGTTTGTATTTCTAATGAACTAACCAACCTCAAGATGGCTTGCAGCAAAAACAAAATTGAGGTTATTGAGAAGAATGAAGAACACATAGAAGCAATGGATAGGAAAGAGACACAAACATCAGTTGGCATGGATTGCTCTTCACCCTCTTTTTCATCCAGTATTGATGATGAACTGTTACTATGGAATTCACTTGATCTTCCTACTGTTTGTTGTGTTAACTAG 1221 0.4038 MARKRKASEEGKERNLSDETMAWDEVMKEAAALGSGRKLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPGYQSSSTPALPSKITNLLLQRLKARNDTRTKPCTVSSSSSSTSLIINQQQSQQEDVHGNESTYFTLDQFSDFLNDPEDYSTNNNEFSNDSAQIDCITNSLESCLNENDDCRENEKEMEMEFDFNSVTQTSSADVNSGGEREEDSEEGTDLSAQDFQFLDNVVPSSYHYSLFEITEEIEEQLEAENCGDEPPMFREVLKRMKYERKFSASLYAFNGIPECLKLKVESGNKHRSEVCISNELTNLKMACSKNKIEVIEKNEEHIEAMDRKETQTSVGMDCSSPSFSSSIDDELLLWNSLDLPTVCCVN* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1049 406 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 345 - -
Vra4g1049 406 Coils Coil 200 220 - -
Vra4g1049 406 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Vra4g1049 406 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Vra4g1049 406 MobiDBLite consensus disorder prediction 222 251 - -
Vra4g1049 406 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Vra4g1049 406 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Vra4g1049 406 MobiDBLite consensus disorder prediction 1 20 - -
Vra4g1049 406 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Vra4g1049 406 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Vra4g1049 406 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Vra4g1049 406 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 345 - -
Vra4g1049 406 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1049 Vra-Chr4 17698179 17700680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1049 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 2.77e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra4g1049 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1049 K09286 - gmx:100796159 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1049 4 17698179 17700680 Vra4g1049 4 17698179 17700680 ECH